TransView-package	TransView-package
annotatePeaks	annotatePeaks
chromosomes	DensityContainer-class
chromosomes,DensityContainer-method	DensityContainer-class
class:DensityContainer	DensityContainer-class
class:TVResults	TVResults-class
clusters	TVResults-class
clusters,TVResults-method	TVResults-class
cluster_order	TVResults-class
cluster_order,TVResults-method	TVResults-class
collapsed	DensityContainer-class
collapsed,DensityContainer-method	DensityContainer-class
compression	DensityContainer-class
compression,DensityContainer-method	DensityContainer-class
data_pointer	DensityContainer-class
data_pointer,DensityContainer-method	DensityContainer-class
DensityContainer-class	DensityContainer-class
env	DensityContainer-class
env,DensityContainer-method	DensityContainer-class
ex_name	DensityContainer-class
ex_name,DensityContainer-method	DensityContainer-class
ex_name<-	DensityContainer-class
ex_name<-,DensityContainer-method	DensityContainer-class
filtered	DensityContainer-class
filtered,DensityContainer-method	DensityContainer-class
filtered_reads	DensityContainer-class
filtered_reads,DensityContainer-method	DensityContainer-class
fmapmass	DensityContainer-class
fmapmass,DensityContainer-method	DensityContainer-class
gcoverage	DensityContainer-class
gcoverage,DensityContainer-method	DensityContainer-class
gsize	DensityContainer-class
gsize,DensityContainer-method	DensityContainer-class
gtf2gr	gtf2gr
histogram	histogram-methods
histogram,DensityContainer-method	histogram-methods
histogram-methods	histogram-methods
lcoverage	DensityContainer-class
lcoverage,DensityContainer-method	DensityContainer-class
lmaxScore	DensityContainer-class
lmaxScore,DensityContainer-method	DensityContainer-class
lowqual	DensityContainer-class
lowqual,DensityContainer-method	DensityContainer-class
lsize	DensityContainer-class
lsize,DensityContainer-method	DensityContainer-class
macs2gr	macs2gr
maxScore	DensityContainer-class
maxScore,DensityContainer-method	DensityContainer-class
meltPeak	meltPeak
neg	DensityContainer-class
neg,DensityContainer-method	DensityContainer-class
nreads	DensityContainer-class
nreads,DensityContainer-method	DensityContainer-class
origin	DensityContainer-class
origin,DensityContainer-method	DensityContainer-class
paired	DensityContainer-class
paired,DensityContainer-method	DensityContainer-class
paired_reads	DensityContainer-class
paired_reads,DensityContainer-method	DensityContainer-class
parameters	TVResults-class
parameters,TVResults-method	TVResults-class
parseReads	parseReads
peak2tss	peak2tss
plotTV	plotTV
plotTVData	plotTVData
plotTVData,TVResults	plotTVData
plotTVData,TVResults-method	plotTVData
plotTVData-methods	plotTVData
pos	DensityContainer-class
pos,DensityContainer-method	DensityContainer-class
proper_pairs	DensityContainer-class
proper_pairs,DensityContainer-method	DensityContainer-class
readthrough_pairs	DensityContainer-class
readthrough_pairs,DensityContainer-method	DensityContainer-class
rmTV	rmTV
rmTV,DensityContainer-method	rmTV
rmTV-methods	rmTV
scores_peaks	TVResults-class
scores_peaks,TVResults-method	TVResults-class
scores_rna	TVResults-class
scores_rna,TVResults-method	TVResults-class
show,DensityContainer-method	DensityContainer-class
show,TVResults-method	TVResults-class
size	DensityContainer-class
size,DensityContainer-method	DensityContainer-class
slice1	slice1
slice1,DensityContainer,character,numeric,numeric-method	slice1
slice1-methods	slice1
slice1T	slice1T
slice1T,DensityContainer,character-method	slice1T
slice1T-methods	slice1T
sliceN	slice1
sliceN,DensityContainer-method	slice1
sliceN-methods	slice1
sliceNT	slice1T
sliceNT,DensityContainer,character-method	slice1T
sliceNT-methods	slice1T
spliced	DensityContainer-class
spliced,DensityContainer-method	DensityContainer-class
spliced<-	DensityContainer-class
spliced<-,DensityContainer-method	DensityContainer-class
strands	DensityContainer-class
strands,DensityContainer-method	DensityContainer-class
summaryTV	TVResults-class
summaryTV,TVResults-method	TVResults-class
TransView	TransView-package
TVResults-class	TVResults-class
tvStats	tvStats-methods
tvStats,DensityContainer-method	tvStats-methods
tvStats-methods	tvStats-methods
