{% set version = "1.38.0" %}
{% set name = "tigre" %}
{% set bioc = "3.9" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: af4ce4d96d3000ecaa64b6f65c77c023
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: drosgenome1.db, puma, lumi, BiocStyle, BiocManager
requirements:
  host:
    - 'bioconductor-annotate >=1.62.0,<1.63.0'
    - 'bioconductor-annotationdbi >=1.46.0,<1.47.0'
    - 'bioconductor-biobase >=2.44.0,<2.45.0'
    - 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
    - r-base
    - r-dbi
    - r-gplots
    - r-rsqlite
  run:
    - 'bioconductor-annotate >=1.62.0,<1.63.0'
    - 'bioconductor-annotationdbi >=1.46.0,<1.47.0'
    - 'bioconductor-biobase >=2.44.0,<2.45.0'
    - 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
    - r-base
    - r-dbi
    - r-gplots
    - r-rsqlite
  build:
    - {{ compiler('c') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: AGPL-3
  summary: 'The tigre package implements our methodology of Gaussian process differential equation models for analysis of gene expression time series from single input motif networks. The package can be used for inferring unobserved transcription factor (TF) protein concentrations from expression measurements of known target genes, or for ranking candidate targets of a TF.'
extra:
  identifiers:
    - biotools:tigre
  parent_recipe:
    name: bioconductor-tigre
    path: recipes/bioconductor-tigre
    version: 1.34.0

