citEntry(entry="Article",
  header="The tigre package is based on a body of methodological
  research.  The software itself can be cited as:",
  author = "Antti Honkela and Pei Gao and Jonatan Ropponen and Magnus Rattray and Neil D Lawrence",
  title = "tigre: Transcription factor Inference through Gaussian process Reconstruction of Expression for Bioconductor",
  journal = "Bioinformatics",
  year = "2011",
  volume = "27",
  pages = "1026-1027",
  number = "7",
  doi = "10.1093/bioinformatics/btr057",
  url = "http://dx.doi.org/10.1093/bioinformatics/btr057",
  textVersion = paste(
    "Antti Honkela, Pei Gao, Jonatan Ropponen, Magnus Rattray,
    and Neil D. Lawrence.",
    "tigre: Transcription factor Inference through Gaussian
    process Reconstruction of Expression for Bioconductor.",
    "Bioinformatics 27(7):1026-1027, 2011.",
    "DOI: 10.1093/bioinformatics/btr057."
  )
)

citEntry(entry="Article",
  header="The underlying methodology papers can be cited as:",
  author =       "Antti Honkela and Charles Girardot and E. Hilary Gustafson and Ya-Hsin Liu and Eileen E.M. Furlong and Neil D. Lawrence and Magnus Rattray",
  title =        "Model-based method for transcription factor target identification with limited data",
  journal =      "Proc Natl Acad Sci USA",
  year =         "2010",
  volume =       "107",
  pages =        "7793-7798",
  number =       "17",
  doi =          "10.1073/pnas.0914285107",
  url =          "http://dx.doi.org/10.1073/pnas.0914285107",
  textVersion = paste(
    "Antti Honkela, Charles Girardot, E. Hilary Gustafson, Ya-Hsin Liu,
    Eileen E. M. Furlong, Neil D. Lawrence, and Magnus Rattray.",
    "Model-based method for transcription factor target identification
    with limited data.",
    "Proc Natl Acad Sci USA 107(17):7793-7798, 2010.",
    "DOI: 10.1073/pnas.0914285107."
  )
)

citEntry(entry="Article",
  author = "Pei Gao and Antti Honkela and Magnus Rattray and Neil D Lawrence",
  title = "Gaussian process modelling of latent chemical species: applications to inferring transcription factor activities",
  journal = "Bioinformatics",
  year = "2008",
  volume = "24",
  pages = "i70-i75",
  number = "16",
  doi = "10.1093/bioinformatics/btn278",
  textVersion = paste(
    "Pei Gao, Antti Honkela, Magnus Rattray, and Neil D. Lawrence.",
    "Gaussian process modelling of latent chemical species: applications
    to inferring transcription factor activities.",
    "Bioinformatics 24(16):i70-i75, 2008.",
    "DOI: 10.1093/bioinformatics/btn278."
  )
)

citEntry(entry="InCollection",
  author = "Neil D. Lawrence and Guido Sanguinetti and Magnus Rattray",
  title = "Modelling transcriptional regulation using {G}aussian processes",
  booktitle = "Advances in Neural Information Processing Systems",
  publisher = "MIT Press",
  year = "2007",
  editor = "B. Sch\\\"{o}lkopf and J. C. Platt and T. Hofmann",
  volume = "19",
  pages = "785-792",
  address = "Cambridge, MA",
  textVersion = paste(
    "Neil D. Lawrence, Guido Sanguinetti, and Magnus Rattray.",
    "Modelling transcriptional regulation using Gaussian processes.",
    "In B. Scholkopf, J. C. Platt, and T. Hofmann, editors,
    Advances in Neural Information Processing Systems, volume 19, pages
    785-792. MIT Press, Cambridge, MA, 2007."
  )
)

citFooter("This free open-source software implements academic
research by the authors and co-workers. If you use it,
please support the project by citing the appropriate
journal articles.")
