backgd.sd	backgd.sd
bpmapToProbeAnno	bpmapToProbeAnno
cmarrt.ma	cmarrt.ma
cmarrt.peak	cmarrt.peak
correlate	correlate
correlationPlot	correlationPlot
declare.bound	declare.bound
densityscatter	densityscatter
expressionByFeature	expressionByFeature
fill	fill
fillNA	fillNA
filterGenes	filterGenes
getFeature	getFeatures
getIntensities	getIntensites
getMeans	getMeans
getProfiles	getProfiles
getProfilesByBase	getProfilesByBase
getRatio	getRatio
heatmapplot	heatmapplot
intersection	intersection
kde2dplot	kde2dplot
list2matrix	list2matrix
ma.stat	ma.stat
makeProbeAnno	makeProbeAnno
makeSplines	makeSplines
mapFeatures	mapFeatures
match_ac	match_ac
normalize.Probes	normalize.Probes
plotBoxes	plot.boxes
plotcmarrt	plot.cmarrt
plotDensity	plot.Density
plotGCbias	plot.gcBias
plotImage	plot.image
plotMA	plot.ma
plotPosBias	plot.posBias
plotProfiles	plotProfiles
plotRatioScatter	plot.ratioScatter
plotScatter	plot.scatter
profileplot	profileplot
rankPercentile.normalize	rankPercentile.normalize
read.gffAnno	read.gffAnno
readCelFile	readCelFile
remap	remap
RGlist2ExpresionSet	RGlist2ExpressionSet
rm.small.peak	rm.small.peak
sameLength	sameLength
singleclusterplot	singleclusterplot
sortbygenomic	sort.by.genomic
substract	substract
whichIn	whichIn
windowxy	windowxy
writeGFF	writeGFF
writePosFile	writePosFile
writeWIG	writeWIG
