{% set version = "1.14.0" %}
{% set name = "srnadiff" %}
{% set bioc = "3.14" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: f7f0d2f11dce0d17ced8ffa3873bc05d
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: knitr, rmarkdown, testthat, BiocManager, BiocStyle
# SystemRequirements: C++11
requirements:
  host:
    - 'bioconductor-bayseq >=2.28.0,<2.29.0'
    - 'bioconductor-biocparallel >=1.28.0,<1.29.0'
    - 'bioconductor-biocstyle >=2.22.0,<2.23.0'
    - 'bioconductor-deseq2 >=1.34.0,<1.35.0'
    - 'bioconductor-edger >=3.36.0,<3.37.0'
    - 'bioconductor-genomeinfodb >=1.30.0,<1.31.0'
    - 'bioconductor-genomicalignments >=1.30.0,<1.31.0'
    - 'bioconductor-genomicfeatures >=1.46.0,<1.47.0'
    - 'bioconductor-genomicranges >=1.46.0,<1.47.0'
    - 'bioconductor-gviz >=1.38.0,<1.39.0'
    - 'bioconductor-iranges >=2.28.0,<2.29.0'
    - 'bioconductor-rsamtools >=2.10.0,<2.11.0'
    - 'bioconductor-rtracklayer >=1.54.0,<1.55.0'
    - 'bioconductor-s4vectors >=0.32.0,<0.33.0'
    - 'bioconductor-summarizedexperiment >=1.24.0,<1.25.0'
    - r-base
    - r-biocmanager
    - r-devtools
    - 'r-rcpp >=0.12.8'
    - libblas
    - liblapack
  run:
    - 'bioconductor-bayseq >=2.28.0,<2.29.0'
    - 'bioconductor-biocparallel >=1.28.0,<1.29.0'
    - 'bioconductor-biocstyle >=2.22.0,<2.23.0'
    - 'bioconductor-deseq2 >=1.34.0,<1.35.0'
    - 'bioconductor-edger >=3.36.0,<3.37.0'
    - 'bioconductor-genomeinfodb >=1.30.0,<1.31.0'
    - 'bioconductor-genomicalignments >=1.30.0,<1.31.0'
    - 'bioconductor-genomicfeatures >=1.46.0,<1.47.0'
    - 'bioconductor-genomicranges >=1.46.0,<1.47.0'
    - 'bioconductor-gviz >=1.38.0,<1.39.0'
    - 'bioconductor-iranges >=2.28.0,<2.29.0'
    - 'bioconductor-rsamtools >=2.10.0,<2.11.0'
    - 'bioconductor-rtracklayer >=1.54.0,<1.55.0'
    - 'bioconductor-s4vectors >=0.32.0,<0.33.0'
    - 'bioconductor-summarizedexperiment >=1.24.0,<1.25.0'
    - r-base
    - r-biocmanager
    - r-devtools
    - 'r-rcpp >=0.12.8'
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'Finding differentially expressed unannotated genomic regions from RNA-seq data'
  description: 'srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification. It reads BAM files as input, and outputs a list differentially regions, together with the adjusted p-values.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

