annotReg                Accessors for the 'annotReg' slot of an
                        srnadiffExp object
bamFiles                Accessors for the 'bamFiles' slot of an
                        srnadiffExp object
chromosomeSizes         Accessors for the 'chromosomeSizes' slot of an
                        srnadiffExp object
countMatrix             Accessors for the 'countMatrix' slot of an
                        srnadiffExp object
coverages               Accessors for the 'coverages' slot of an
                        srnadiffExp object
normFactors             Accessors for the 'normFactors' slot of an
                        srnadiffExp object
parameters              Accessors for the 'parameters' slot of an
                        srnadiffExp object
plotRegions             Plot the coverage information surrounding
                        genomic regions
readAnnotation          Reads and parses GFF/GTF files
regions                 Extracts differentially expressed regions of an
                        srnadiffExp object
sampleInfo              Accessors for the 'sampleInfo' slot of an
                        srnadiffExp object
srnadiff                Finding differentially expressed unannotated
                        genomic regions from RNA-seq data
srnadiffDefaultParameters
                        List of srnadiff default parameters.
srnadiffExample         Example constructor
srnadiffExp             Infrastructure for sRNA-Seq experiment and
                        differential expression
