# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Feb 26 07:50:35 2022
# ------------------------------------------------

package:
  name: bioconductor-srnadiff
  version: 1.14.0
source:
  md5: f7f0d2f11dce0d17ced8ffa3873bc05d
  url:
    - https://bioarchive.galaxyproject.org/srnadiff_1.14.0.tar.gz
    - https://bioconductor.org/packages/3.14/bioc/src/contrib/srnadiff_1.14.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-srnadiff/bioconductor-srnadiff_1.14.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41h619a076_1
requirements:
  build:
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    - gcc_linux-64 10.3.0 hc39de41_6
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    - gxx_linux-64 10.3.0 h2593f52_6
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 10.3.0 he6cfe16_12
    - libgcc-ng 11.2.0 h1d223b6_12
    - libgomp 11.2.0 h1d223b6_12
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    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
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  run:
    - bioconductor-bayseq >=2.28.0,<2.29.0
    - bioconductor-biocparallel >=1.28.0,<1.29.0
    - bioconductor-biocstyle >=2.22.0,<2.23.0
    - bioconductor-deseq2 >=1.34.0,<1.35.0
    - bioconductor-edger >=3.36.0,<3.37.0
    - bioconductor-genomeinfodb >=1.30.0,<1.31.0
    - bioconductor-genomicalignments >=1.30.0,<1.31.0
    - bioconductor-genomicfeatures >=1.46.0,<1.47.0
    - bioconductor-genomicranges >=1.46.0,<1.47.0
    - bioconductor-gviz >=1.38.0,<1.39.0
    - bioconductor-iranges >=2.28.0,<2.29.0
    - bioconductor-rsamtools >=2.10.0,<2.11.0
    - bioconductor-rtracklayer >=1.54.0,<1.55.0
    - bioconductor-s4vectors >=0.32.0,<0.33.0
    - bioconductor-summarizedexperiment >=1.24.0,<1.25.0
    - libblas >=3.8.0,<4.0a0
    - libgcc-ng >=10.3.0
    - liblapack >=3.8.0,<4.0a0
    - libstdcxx-ng >=10.3.0
    - r-base >=4.1,<4.2.0a0
    - r-biocmanager
    - r-devtools
    - r-rcpp >=0.12.8
test:
  commands:
    - $R -e "library('srnadiff')"
about:
  description: srnadiff is a package that finds differently expressed regions from
    RNA-seq data at base-resolution level without relying on existing annotation.
    To do so, the package implements the identify-then-annotate methodology that builds
    on the idea of combining two pipelines approachs differential expressed regions
    detection and differential expression quantification. It reads BAM files as input,
    and outputs a list differentially regions, together with the adjusted p-values.
  home: https://bioconductor.org/packages/3.14/bioc/html/srnadiff.html
  license: GPL-3
  license_file: /opt/conda/conda-bld/bioconductor-srnadiff_1645875118294/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/share/licenses/GPL-3
  summary: Finding differentially expressed unannotated genomic regions from RNA-seq
    data
extra:
  copy_test_source_files: true
  final: true
