{% set version = "1.10.1" %}
{% set name = "srnadiff" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name }}/bioconductor-{{ name }}_{{ version }}_src_all.tar.gz'
  md5: ff50de9577a8e907ddd0d9c5575a6e52
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: knitr, rmarkdown, testthat
# SystemRequirements: C++11
requirements:
  host:
    - 'bioconductor-biocparallel >=1.24.0,<1.25.0'
    - 'bioconductor-biocstyle >=2.18.0,<2.19.0'
    - 'bioconductor-deseq2 >=1.30.0,<1.31.0'
    - 'bioconductor-genomeinfodb >=1.26.0,<1.27.0'
    - 'bioconductor-genomicalignments >=1.26.0,<1.27.0'
    - 'bioconductor-genomicfeatures >=1.42.0,<1.43.0'
    - 'bioconductor-genomicranges >=1.42.0,<1.43.0'
    - 'bioconductor-gviz >=1.34.0,<1.35.0'
    - 'bioconductor-iranges >=2.24.0,<2.25.0'
    - 'bioconductor-rsamtools >=2.6.0,<2.7.0'
    - 'bioconductor-rtracklayer >=1.50.0,<1.51.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-biocmanager
    - r-devtools
    - 'r-rcpp >=0.12.8'
    - libblas
    - liblapack
  run:
    - 'bioconductor-biocparallel >=1.24.0,<1.25.0'
    - 'bioconductor-biocstyle >=2.18.0,<2.19.0'
    - 'bioconductor-deseq2 >=1.30.0,<1.31.0'
    - 'bioconductor-genomeinfodb >=1.26.0,<1.27.0'
    - 'bioconductor-genomicalignments >=1.26.0,<1.27.0'
    - 'bioconductor-genomicfeatures >=1.42.0,<1.43.0'
    - 'bioconductor-genomicranges >=1.42.0,<1.43.0'
    - 'bioconductor-gviz >=1.34.0,<1.35.0'
    - 'bioconductor-iranges >=2.24.0,<2.25.0'
    - 'bioconductor-rsamtools >=2.6.0,<2.7.0'
    - 'bioconductor-rtracklayer >=1.50.0,<1.51.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-summarizedexperiment >=1.20.0,<1.21.0'
    - r-base
    - r-biocmanager
    - r-devtools
    - 'r-rcpp >=0.12.8'
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL-3
  summary: 'Finding differentially expressed unannotated genomic regions from RNA-seq data'
  description: 'srnadiff is a package that finds differently expressed regions from RNA-seq data at base-resolution level without relying on existing annotation. To do so, the package implements the identify-then-annotate methodology that builds on the idea of combining two pipelines approachs differential expressed regions detection and differential expression quantification.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

