srnadiff-package	srnadiff
annotReg	annotReg
annotReg,srnadiffExp-method	annotReg
annotReg<-	annotReg
annotReg<-,srnadiffExp-method	annotReg
bamFiles	bamFiles
bamFiles,srnadiffExp-method	bamFiles
chromosomeSizes	chromosomeSizes
chromosomeSizes,srnadiffExp-method	chromosomeSizes
countMatrix	countMatrix
countMatrix,srnadiffExp-method	countMatrix
coverages	coverages
coverages,srnadiffExp-method	coverages
normFactors	normFactors
normFactors,srnadiffExp-method	normFactors
normFactors<-	normFactors
normFactors<-,srnadiffExp,numeric-method	normFactors
parameters	parameters
parameters,srnadiffExp-method	parameters
parameters<-	parameters
parameters<-,srnadiffExp-method	parameters
plotRegions	plotRegions
print.srnadiff_par	parameters
readAnnotation	readAnnotation
regions	regions
regions,srnadiffExp-method	regions
sampleInfo	sampleInfo
sampleInfo,srnadiffExp-method	sampleInfo
show,srnadiffExp-method	srnadiffExp
srnadiff	srnadiff
srnadiffDefaultParameters	srnadiffDefaultParameters
srnadiffExample	srnadiffExample
srnadiffExp	srnadiffExp
srnadiffExp-class	srnadiffExp
