Package: specL
Type: Package
Title: specL - Prepare Peptide Spectrum Matches for Use in Targeted
        Proteomics
Version: 1.14.0
Authors@R: c(person("Christian", "Panse", email = "cp@fgcz.ethz.ch", role = c("aut", "cre"), comment = c(ORCID = "0000-0003-1975-3064")),
        person("Jonas", "Grossmann", email = "jg@fgcz.ethz.ch", role = "aut", comment = c(ORCID = "0000-0002-6899-9020")),
        person("Christian", "Trachsel", email = "christian.trachsel@fgcz.uzh.ch", role = "aut"),
        person("Witold E.", "Wolski", email = "wewolski@gmail.com", role = "ctb"))
Author: Christian Trachsel [aut],
	Christian Panse [aut, cre] (0000-0003-1975-3064), 
	Jonas Grossmann [aut] (0000-0002-6899-9020),
	Witold E. Wolski [ctb]
Maintainer: Christian Panse <cp@fgcz.ethz.ch>, Witold E. Wolski <wewolski@gmail.com>
Depends: R (>= 3.3.2), DBI (>= 0.5.1), methods (>= 3.3.2), protViz (>=
        0.2.45), RSQLite (>= 1.1.2), seqinr (>= 3.3.3)
Suggests: BiocGenerics, BiocStyle (>= 2.2.1), knitr (>= 1.15.1), msqc1
        (>= 1.0.0), plotrix (>= 3.6.4), prozor (>= 0.2.2), RUnit (>=
        0.4.31)
Description: provides a function for generating spectra libraries
        which can be used for MRM SRM MS workflows in proteomics. The
        package provides a BiblioSpec reader, a function which can add
        the protein information using a FASTA formatted amino acid
        file, and an export method for using the created library in the
        Spectronaut software.
License: GPL-3
URL: https://github.com/fgcz/specL
Collate: read.bibliospec.R genSwathIonLib.R annotate.protein_id.R
        AllGenerics.R specL.R specLSet.R cdsw.R zzz.R
biocViews: MassSpectrometry, Proteomics
LazyData: true
BugReports: https://github.com/fgcz/specL/issues
VignetteBuilder: knitr
NeedsCompilation: no
Packaged: 2018-05-01 00:16:15 UTC; biocbuild
Built: R 3.5.1; ; 2018-10-30 08:27:04 UTC; unix
