# This file created by conda-build 3.18.9
# meta.yaml template originally from:
# /opt/recipe, last modified Mon Nov  4 17:34:45 2019
# ------------------------------------------------

package:
    name: bioconductor-signer
    version: 1.12.0
source:
    md5: c2d6fe26f8351a51ee5df2ca8d73a120
    url:
        - https://bioarchive.galaxyproject.org/signeR_1.12.0.tar.gz
        - https://bioconductor.org/packages/3.10/bioc/src/contrib/signeR_1.12.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-signer/bioconductor-signer_1.12.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r36he1b5a44_0
requirements:
    build:
        - _libgcc_mutex 0.1 main
        - binutils_impl_linux-64 2.31.1 h7fc9f1b_2
        - binutils_linux-64 2.31.1 h6176602_12
        - gcc_impl_linux-64 7.3.0 habb00fd_2
        - gcc_linux-64 7.3.0 h553295d_12
        - gxx_impl_linux-64 7.3.0 hdf63c60_2
        - gxx_linux-64 7.3.0 h553295d_12
        - libgcc-ng 9.1.0 hdf63c60_0
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - make 4.2.1 h14c3975_2004
    host:
        - _libgcc_mutex 0.1 main
        - _r-mutex 1.0.1 anacondar_1
        - binutils_impl_linux-64 2.31.1 h7fc9f1b_2
        - binutils_linux-64 2.31.1 h6176602_12
        - bioconductor-annotationdbi 1.48.0 r36_0
        - bioconductor-biobase 2.46.0 r36h516909a_0
        - bioconductor-biocfilecache 1.10.0 r36_0
        - bioconductor-biocgenerics 0.32.0 r36_0
        - bioconductor-biocparallel 1.20.0 r36he1b5a44_0
        - bioconductor-biomart 2.42.0 r36_0
        - bioconductor-biostrings 2.54.0 r36h516909a_0
        - bioconductor-bsgenome 1.54.0 r36_0
        - bioconductor-delayedarray 0.12.0 r36h516909a_0
        - bioconductor-genomeinfodb 1.22.0 r36_0
        - bioconductor-genomeinfodbdata 1.2.2 r36_0
        - bioconductor-genomicalignments 1.22.0 r36h516909a_0
        - bioconductor-genomicfeatures 1.38.0 r36_0
        - bioconductor-genomicranges 1.38.0 r36h516909a_0
        - bioconductor-iranges 2.20.0 r36h516909a_0
        - bioconductor-rhtslib 1.18.0 r36h516909a_0
        - bioconductor-rsamtools 2.2.0 r36he1b5a44_0
        - bioconductor-rtracklayer 1.46.0 r36h516909a_0
        - bioconductor-s4vectors 0.24.0 r36h516909a_0
        - bioconductor-summarizedexperiment 1.16.0 r36_0
        - bioconductor-variantannotation 1.32.0 r36h516909a_0
        - bioconductor-xvector 0.26.0 r36h516909a_0
        - bioconductor-zlibbioc 1.32.0 r36h516909a_0
        - bwidget 1.9.13 0
        - bzip2 1.0.8 h516909a_1
        - ca-certificates 2019.9.11 hecc5488_0
        - cairo 1.16.0 hfb77d84_1002
        - curl 7.65.3 hf8cf82a_0
        - fontconfig 2.13.1 h86ecdb6_1001
        - freetype 2.10.0 he983fc9_1
        - fribidi 1.0.5 h516909a_1002
        - gcc_impl_linux-64 7.3.0 habb00fd_2
        - gcc_linux-64 7.3.0 h553295d_12
        - gettext 0.19.8.1 hc5be6a0_1002
        - gfortran_impl_linux-64 7.3.0 hdf63c60_2
        - gfortran_linux-64 7.3.0 h553295d_12
        - glib 2.58.3 h6f030ca_1002
        - graphite2 1.3.13 hf484d3e_1000
        - gsl 2.5 h294904e_1
        - gxx_impl_linux-64 7.3.0 hdf63c60_2
        - gxx_linux-64 7.3.0 h553295d_12
        - harfbuzz 2.4.0 h9f30f68_3
        - icu 64.2 he1b5a44_1
        - jpeg 9c h14c3975_1001
        - krb5 1.16.3 h05b26f9_1001
        - libblas 3.8.0 14_openblas
        - libcblas 3.8.0 14_openblas
        - libcurl 7.65.3 hda55be3_0
        - libedit 3.1.20170329 hf8c457e_1001
        - libffi 3.2.1 he1b5a44_1006
        - libgcc-ng 9.1.0 hdf63c60_0
        - libgfortran-ng 7.3.0 hdf63c60_2
        - libiconv 1.15 h516909a_1005
        - liblapack 3.8.0 14_openblas
        - libopenblas 0.3.7 h6e990d7_2
        - libpng 1.6.37 hed695b0_0
        - libssh2 1.8.2 h22169c7_2
        - libstdcxx-ng 9.1.0 hdf63c60_0
        - libtiff 4.1.0 hfc65ed5_0
        - libuuid 2.32.1 h14c3975_1000
        - libxcb 1.13 h14c3975_1002
        - libxml2 2.9.10 hee79883_0
        - lz4-c 1.8.3 he1b5a44_1001
        - make 4.2.1 h14c3975_2004
        - ncurses 6.1 hf484d3e_1002
        - openssl 1.1.1c h516909a_0
        - pango 1.42.4 ha030887_1
        - pcre 8.43 he1b5a44_0
        - pixman 0.38.0 h516909a_1003
        - pthread-stubs 0.4 h14c3975_1001
        - r-askpass 1.1 r36hcdcec82_1
        - r-assertthat 0.2.1 r36h6115d3f_1
        - r-backports 1.1.5 r36hcdcec82_0
        - r-base 3.6.1 hba50c9b_5
        - r-bh 1.69.0_1 r36h6115d3f_1
        - r-bibtex 0.4.2 r36hcdcec82_1003
        - r-bit 1.1_14 r36hcdcec82_1
        - r-bit64 0.9_7 r36hcdcec82_1001
        - r-bitops 1.0_6 r36hcdcec82_1003
        - r-blob 1.2.0 r36_1
        - r-class 7.3_15 r36hcdcec82_1001
        - r-cli 1.1.0 r36h6115d3f_2
        - r-cluster 2.1.0 r36h9bbef5b_2
        - r-codetools 0.2_16 r36h6115d3f_1001
        - r-colorspace 1.4_1 r36hcdcec82_1
        - r-crayon 1.3.4 r36h6115d3f_1002
        - r-curl 4.2 r36hcdcec82_0
        - r-dbi 1.0.0 r36h6115d3f_1002
        - r-dbplyr 1.4.2 r36h6115d3f_1
        - r-digest 0.6.22 r36h0357c0b_0
        - r-doparallel 1.0.15 r36h6115d3f_0
        - r-dplyr 0.8.3 r36h0357c0b_3
        - r-ellipsis 0.3.0 r36hcdcec82_0
        - r-fansi 0.4.0 r36hcdcec82_1001
        - r-foreach 1.4.7 r36h6115d3f_0
        - r-formatr 1.7 r36h6115d3f_1
        - r-futile.logger 1.4.3 r36h6115d3f_1002
        - r-futile.options 1.0.1 r36h6115d3f_1001
        - r-ggplot2 3.2.1 r36h6115d3f_0
        - r-glue 1.3.1 r36hcdcec82_1
        - r-gridbase 0.4_7 r36h6115d3f_1002
        - r-gtable 0.3.0 r36h6115d3f_2
        - r-hms 0.5.2 r36h6115d3f_0
        - r-httr 1.4.1 r36h6115d3f_1
        - r-iterators 1.0.12 r36h6115d3f_0
        - r-jsonlite 1.6 r36hcdcec82_1001
        - r-labeling 0.3 r36h6115d3f_1002
        - r-lambda.r 1.2.4 r36h6115d3f_0
        - r-lattice 0.20_38 r36hcdcec82_1002
        - r-lazyeval 0.2.2 r36hcdcec82_1
        - r-magrittr 1.5 r36h6115d3f_1002
        - r-mass 7.3_51.4 r36hcdcec82_1
        - r-matrix 1.2_17 r36hcdcec82_1
        - r-matrixstats 0.55.0 r36hcdcec82_0
        - r-memoise 1.1.0 r36h6115d3f_1003
        - r-mgcv 1.8_29 r36hcdcec82_0
        - r-mime 0.7 r36hcdcec82_1
        - r-munsell 0.5.0 r36h6115d3f_1002
        - r-nlme 3.1_141 r36h9bbef5b_1
        - r-nloptr 1.2.1 r36h0357c0b_1
        - r-nmf 0.21.0 r36h0357c0b_1003
        - r-openssl 1.4.1 r36h9c8475f_0
        - r-pillar 1.4.2 r36h6115d3f_2
        - r-pkgconfig 2.0.3 r36h6115d3f_0
        - r-pkgmaker 0.27 r36h6115d3f_1001
        - r-plogr 0.2.0 r36h6115d3f_1002
        - r-plyr 1.8.4 r36h0357c0b_1003
        - r-pmcmr 4.3 r36h6115d3f_1002
        - r-prettyunits 1.0.2 r36h6115d3f_1002
        - r-progress 1.2.2 r36h6115d3f_1
        - r-purrr 0.3.3 r36hcdcec82_0
        - r-r6 2.4.0 r36h6115d3f_2
        - r-rappdirs 0.3.1 r36hcdcec82_1003
        - r-rcolorbrewer 1.1_2 r36h6115d3f_1002
        - r-rcpp 1.0.2 r36h0357c0b_0
        - r-rcpparmadillo 0.9.800.1.0 r36h0357c0b_0
        - r-rcurl 1.95_4.12 r36hcdcec82_1
        - r-registry 0.5_1 r36h6115d3f_1
        - r-reshape2 1.4.3 r36h0357c0b_1004
        - r-rlang 0.4.1 r36hcdcec82_0
        - r-rngtools 1.4 r36h6115d3f_1
        - r-rsqlite 2.1.2 r36h0357c0b_1
        - r-scales 1.0.0 r36h0357c0b_1002
        - r-snow 0.4_3 r36h6115d3f_1001
        - r-stringi 1.4.3 r36h0e574ca_3
        - r-stringr 1.4.0 r36h6115d3f_1
        - r-sys 3.3 r36hcdcec82_0
        - r-tibble 2.1.3 r36hcdcec82_1
        - r-tidyselect 0.2.5 r36h0357c0b_1001
        - r-utf8 1.1.4 r36hcdcec82_1001
        - r-vctrs 0.2.0 r36hcdcec82_1
        - r-viridislite 0.3.0 r36h6115d3f_1002
        - r-withr 2.1.2 r36h6115d3f_1001
        - r-xml 3.98_1.20 r36hcdcec82_1
        - r-xtable 1.8_4 r36h6115d3f_2
        - r-zeallot 0.1.0 r36h6115d3f_1001
        - readline 8.0 hf8c457e_0
        - sed 4.7 h1bed415_1000
        - tk 8.6.9 hed695b0_1003
        - tktable 2.10 h555a92e_3
        - xorg-kbproto 1.0.7 h14c3975_1002
        - xorg-libice 1.0.10 h516909a_0
        - xorg-libsm 1.2.3 h84519dc_1000
        - xorg-libx11 1.6.9 h516909a_0
        - xorg-libxau 1.0.9 h14c3975_0
        - xorg-libxdmcp 1.1.3 h516909a_0
        - xorg-libxext 1.3.4 h516909a_0
        - xorg-libxrender 0.9.10 h516909a_1002
        - xorg-renderproto 0.11.1 h14c3975_1002
        - xorg-xextproto 7.3.0 h14c3975_1002
        - xorg-xproto 7.0.31 h14c3975_1007
        - xz 5.2.4 h14c3975_1001
        - zlib 1.2.11 h516909a_1006
        - zstd 1.4.3 h3b9ef0a_0
    run:
        - bioconductor-biocgenerics >=0.32.0,<0.33.0
        - bioconductor-biostrings >=2.54.0,<2.55.0
        - bioconductor-genomeinfodb >=1.22.0,<1.23.0
        - bioconductor-genomicranges >=1.38.0,<1.39.0
        - bioconductor-iranges >=2.20.0,<2.21.0
        - bioconductor-variantannotation >=1.32.0,<1.33.0
        - libgcc-ng >=7.3.0
        - libstdcxx-ng >=7.3.0
        - r-base >=3.6,<3.7.0a0
        - r-class
        - r-nloptr
        - r-nmf
        - r-pmcmr
        - r-rcpp
        - r-rcpparmadillo >=0.7.100
test:
    commands:
        - $R -e "library('signeR')"
about:
    description: The signeR package provides an empirical Bayesian approach to mutational
        signature discovery. It is designed to analyze single nucleotide variaton
        (SNV) counts in cancer genomes, but can also be applied to other features
        as well. Functionalities to characterize signatures or genome samples according
        to exposure patterns are also provided.
    home: https://bioconductor.org/packages/3.10/bioc/html/signeR.html
    license: GPL-3
    license_file: /opt/conda/conda-bld/bioconductor-signer_1572894242171/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_pla/lib/R/share/licenses/GPL-3
    summary: Empirical Bayesian approach to mutational signature discovery
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:signer
