Package: signatureSearch
Title: Environment for Gene Expression Searching Combined with
        Functional Enrichment Analysis
Version: 1.4.3
Authors@R: c(person("Yuzhu", "Duan", email = "yduan004@ucr.edu", 
           role = c("cre", "aut")),
           person("Thomas", "Girke", email = "thomas.girke@ucr.edu", 
           role = "aut"))
Description: This package implements algorithms and data structures for 
             performing gene expression signature (GES) searches, and 
             subsequently interpreting the results functionally with 
             specialized enrichment methods.
Depends: R(>= 3.6.0), Rcpp, SummarizedExperiment
Imports: AnnotationDbi, ggplot2, data.table, ExperimentHub, HDF5Array,
        magrittr, RSQLite, dplyr, fgsea, scales, methods, qvalue,
        stats, utils, reshape2, visNetwork, BiocParallel, fastmatch,
        reactome.db, Matrix, clusterProfiler, readr, DOSE, rhdf5,
        GSEABase, DelayedArray
Suggests: knitr, testthat, rmarkdown, BiocStyle, org.Hs.eg.db
License: Artistic-2.0
SystemRequirements: C++11
LinkingTo: Rcpp
Encoding: UTF-8
VignetteBuilder: knitr
RoxygenNote: 7.1.1
NeedsCompilation: yes
biocViews: Software, GeneExpression, GO, KEGG, NetworkEnrichment,
        Sequencing, Coverage, DifferentialExpression
URL: https://github.com/yduan004/signatureSearch/
BugReports: https://github.com/yduan004/signatureSearch/issues
LazyData: true
git_url: https://git.bioconductor.org/packages/signatureSearch
git_branch: RELEASE_3_12
git_last_commit: 4d3a53d
git_last_commit_date: 2021-03-19
Date/Publication: 2021-03-19
Packaged: 2021-03-20 02:17:10 UTC; biocbuild
Author: Yuzhu Duan [cre, aut],
  Thomas Girke [aut]
Maintainer: Yuzhu Duan <yduan004@ucr.edu>
Built: R 4.0.3; x86_64-conda-linux-gnu; 2021-04-01 15:18:29 UTC; unix
