GCT object              An S4 Class to Represent a GCT Object
append2H5               Append Matrix to HDF5 File
build_custom_db         build_custom_db
calcGseaStatBatchCpp    Calculates GSEA statistic valus for all gene
                        sets in 'selectedStats' list.
cell_info               Cell Type Information
chembl_moa_list         MOA to Gene Mappings
clue_moa_list           MOA to Drug Name Mappings
comp_fea_res            Plot for Comparing Ranking Results of FEA
                        Methods
create_empty_h5         Create Empty HDF5 File
dim                     Dimensions of an Object
drug_cell_ranks         Summary ranking statistics across cell types
drugs                   Extract/Assign Drug Names for feaResult
drugs10                 Drug Names Used in Examples
dsea_GSEA               Drug Set Enrichment Analysis (DSEA) with GSEA
                        Algorithm
dsea_hyperG             Drug Set Enrichment Analysis (DSEA) with
                        Hypergeometric Test
dtnetplot               Drug-Target Network Visualization
enrichGO2               GO Term Enrichment with Hypergeometric Test
enrichKEGG2             KEGG Pathway Enrichment with Hypergeometric
                        Test
enrichMOA               MOA Category Enrichment with Hypergeometric
                        Test
feaResult               Constructor for 'feaResult-class'
feaResult-class         feaResult object
gctx2h5                 Convert GCTX to HDF5 File
gessResult              Constructor for 'gessResult-class'
gessResult-class        gessResult object
gess_cmap               CMAP Search Method
gess_cor                Correlation-based Search Method
gess_fisher             Fisher Search Method
gess_gcmap              gCMAP Search Method
gess_lincs              LINCS Search Method
gess_res_vis            GESS Result Visualization
getSig                  Drawn Query GES from Reference Database
get_targets             Target Gene/Protein IDs for Query Drugs
gseGO2                  Modified GSEA with GO Terms
gseKEGG2                Modified GSEA with KEGG
head                    Return the First Part of an Object
mabsGO                  MeanAbs Enrichment Analysis for GO
mabsKEGG                MeanAbs Enrichment Analysis for KEGG
matrix2h5               Write Matrix to HDF5 file
moa_conn                Summarize GESS Results on MOA Level
parse_gctx              Parse GCTX
qSig                    Helper Function to Construct a 'qSig' Object
qSig-class              Class "qSig"
rand_query_ES           Generate WTCS Null Distribution with Random
                        Queries
result                  Method to Extract Result Slots
runWF                   Run the Entire GESS/FEA Workflow
show                    show method
signatureSearch-package
                        Environment for Gene Expression Signature
                        Searching Combined with Functional Enrichment
                        Analysis
sim_score_grp           Summary Scores by Groups of Cell Types
tail                    Return the Last Part of an Object
tarReduce               Show Reduced Targets
targetList              Target Sample Data Set
tsea_dup_hyperG         Target Set Enrichment Analysis (TSEA) with
                        Hypergeometric Test
tsea_mGSEA              Target Set Enrichment Analysis (TSEA) with
                        mGSEA Algorithm
tsea_mabs               Target Set Enrichment Analysis (TSEA) with
                        meanAbs
vec_char_redu           Reduce Number of Character
