SeqCNAInfo-class        Class '"SeqCNAInfo"'
applyFilters            The function applies a set of filters to the
                        raw profile.
applyThresholds         Apply thresholds on the segmented profile in
                        order to call copy numbers.
plotCNProfile           Plots the profile of a 'SeqCNAInfo-class'
                        object.
readSeqsumm             Function that reads seqsumm summarized files.
runGLAD                 Wrapper function that runs the GLAD
                        segmentation algorithm on a 'SeqCNAInfo-class'
                        object.
runSeqnorm              This function calls seqnorm, which normalizes
                        the tumoural profile with respect to either a
                        paired sample or GC content.
runSeqsumm              Function that generates seqsumm summarized
                        files.
seqCNA-package          Copy number analysis of deep sequencing cancer
                        data
seqsumm_HCC1143         Example of a seqsumm output, namely for a
                        sequenced sample of the HCC1143 cancer
                        cell-line.
writeCNProfile          Outputs the processed profile of a
                        'SeqCNAInfo-class' object to the specified
                        folder.
