# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Dec  7 21:56:10 2023
# ------------------------------------------------

package:
  name: bioconductor-seqarray
  version: 1.42.0
source:
  md5: 9754225574380705e505629db229d41a
  url:
    - https://bioarchive.galaxyproject.org/SeqArray_1.42.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/SeqArray/SeqArray_1.42.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/SeqArray_1.42.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-seqarray/bioconductor-seqarray_1.42.0_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-seqarray >=1.42.0,<1.43.0a0
  string: r43hf17093f_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.40 hf600244_0
    - binutils_linux-64 2.40 hbdbef99_2
    - gcc_impl_linux-64 12.3.0 he2b93b0_3
    - gcc_linux-64 12.3.0 h76fc315_2
    - gxx_impl_linux-64 12.3.0 he2b93b0_3
    - gxx_linux-64 12.3.0 h8a814eb_2
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - ld_impl_linux-64 2.40 h41732ed_0
    - libgcc-devel_linux-64 12.3.0 h8bca6fd_103
    - libgcc-ng 13.2.0 h807b86a_3
    - libgomp 13.2.0 h807b86a_3
    - libsanitizer 12.3.0 h0f45ef3_3
    - libstdcxx-devel_linux-64 12.3.0 h8bca6fd_103
    - libstdcxx-ng 13.2.0 h7e041cc_3
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_16
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.1.6 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-biocgenerics 0.48.1 r43hdfd78af_2
    - bioconductor-biostrings 2.70.1 r43ha9d7317_1
    - bioconductor-data-packages 20231203 hdfd78af_0
    - bioconductor-gdsfmt 1.38.0 r43hf17093f_0
    - bioconductor-genomeinfodb 1.38.1 r43hdfd78af_1
    - bioconductor-genomeinfodbdata 1.2.11 r43hdfd78af_1
    - bioconductor-genomicranges 1.54.1 r43ha9d7317_1
    - bioconductor-iranges 2.36.0 r43ha9d7317_1
    - bioconductor-s4vectors 0.40.2 r43ha9d7317_1
    - bioconductor-xvector 0.42.0 r43ha9d7317_1
    - bioconductor-zlibbioc 1.48.0 r43ha9d7317_1
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 hd590300_5
    - c-ares 1.23.0 hd590300_0
    - ca-certificates 2023.11.17 hbcca054_0
    - cairo 1.18.0 h3faef2a_0
    - curl 8.5.0 hca28451_0
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 h77eed37_1
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h267a509_2
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 13.2.0 h338b0a0_3
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 13.2.0 h76e1118_3
    - graphite2 1.3.13 h58526e2_1001
    - gxx_impl_linux-64 13.2.0 h338b0a0_3
    - harfbuzz 8.3.0 h3d44ed6_0
    - icu 73.2 h59595ed_0
    - jq 1.7 hd590300_0
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.2 h659d440_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcurl 8.5.0 hca28451_0
    - libdeflate 1.19 hd590300_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.2.0 ha9c7c90_103
    - libgcc-ng 13.2.0 h807b86a_3
    - libgfortran-ng 13.2.0 h69a702a_3
    - libgfortran5 13.2.0 ha4646dd_3
    - libglib 2.78.2 h783c2da_0
    - libgomp 13.2.0 h807b86a_3
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 3.0.0 hd590300_1
    - liblapack 3.9.0 5_h92ddd45_netlib
    - libnghttp2 1.58.0 h47da74e_0
    - libnsl 2.0.1 hd590300_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 13.2.0 h7e041cc_3
    - libsqlite 3.44.2 h2797004_0
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 13.2.0 ha9c7c90_103
    - libstdcxx-ng 13.2.0 h7e041cc_3
    - libtiff 4.6.0 ha9c0a0a_2
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.2 hd590300_0
    - libxcb 1.15 h0b41bf4_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
    - ncurses 6.4 h59595ed_2
    - oniguruma 6.9.9 hd590300_0
    - openssl 3.2.0 hd590300_1
    - pango 1.50.14 ha41ecd1_2
    - pcre2 10.42 hcad00b1_0
    - pip 23.3.1 pyhd8ed1ab_0
    - pixman 0.42.2 h59595ed_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.12.0 hab00c5b_0_cpython
    - python_abi 3.12 4_cp312
    - pyyaml 6.0.1 py312h98912ed_1
    - r-base 4.3.2 hb8ee39d_1
    - r-bitops 1.0_7 r43h57805ef_2
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-rcurl 1.98_1.13 r43hf9611b0_0
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 68.2.2 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_16
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h0c5db8f_5
    - toml 0.10.2 pyhd8ed1ab_0
    - tomlkit 0.12.3 pyha770c72_0
    - tzdata 2023c h71feb2d_0
    - wheel 0.42.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.1.1 hd590300_0
    - xorg-libsm 1.2.4 h7391055_0
    - xorg-libx11 1.8.7 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_1
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.3 pyhd8ed1ab_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.5 hfc55251_0
  run:
    - bioconductor-biostrings >=2.70.0,<2.71.0
    - bioconductor-biostrings >=2.70.1,<2.71.0a0
    - bioconductor-gdsfmt >=1.38.0,<1.39.0
    - bioconductor-gdsfmt >=1.38.0,<1.39.0a0
    - bioconductor-genomeinfodb >=1.38.0,<1.39.0
    - bioconductor-genomeinfodb >=1.38.1,<1.39.0a0
    - bioconductor-genomicranges >=1.54.0,<1.55.0
    - bioconductor-genomicranges >=1.54.1,<1.55.0a0
    - bioconductor-iranges >=2.36.0,<2.37.0
    - bioconductor-iranges >=2.36.0,<2.37.0a0
    - bioconductor-s4vectors >=0.40.0,<0.41.0
    - bioconductor-s4vectors >=0.40.2,<0.41.0a0
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - libstdcxx-ng >=12
    - r-base >=4.3,<4.4.0a0
test:
  commands:
    - $R -e "library('SeqArray')"
about:
  description: 'Data management of large-scale whole-genome sequencing variant calls
    with thousands of individuals: genotypic data (e.g., SNVs, indels and structural
    variation calls) and annotations in SeqArray GDS files are stored in an array-oriented
    and compressed manner, with efficient data access using the R programming language.'
  home: https://bioconductor.org/packages/3.18/bioc/html/SeqArray.html
  license: GPL-3
  license_file: /opt/conda/conda-bld/bioconductor-seqarray_1701992953107/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_p/lib/R/share/licenses/GPL-3
  summary: Data Management of Large-Scale Whole-Genome Sequence Variant Calls
extra:
  copy_test_source_files: true
  final: true
