# This file created by conda-build 3.15.1
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Oct 17 18:49:35 2018
# ------------------------------------------------

package:
    name: bioconductor-segmentseq
    version: 2.14.0
source:
    sha256: 28d8d72b03d540e5c5d3edfa6f734e70ef345d353788e0fc41e7265ba57c7c27
    url:
        - http://bioconductor.org/packages/3.7/bioc/src/contrib/segmentSeq_2.14.0.tar.gz
        - https://bioarchive.galaxyproject.org/segmentSeq_2.14.0.tar.gz
        - https://depot.galaxyproject.org/software/bioconductor-segmentseq/bioconductor-segmentseq_2.14.0_src_all.tar.gz
build:
    number: '0'
    rpaths:
        - lib/
        - lib/R/lib/
    string: r341_0
requirements:
    host:
        - bioconductor-bayseq 2.14.0 r341_0
        - bioconductor-biobase 2.40.0 r341h470a237_0
        - bioconductor-biocgenerics 0.26.0 r341_0
        - bioconductor-biocparallel 1.14.2 r341h26a2512_0
        - bioconductor-biostrings 2.48.0 r341h470a237_0
        - bioconductor-delayedarray 0.6.6 r341_0
        - bioconductor-edger 3.22.5 r341hfc679d8_0
        - bioconductor-genomeinfodb 1.16.0 r341_0
        - bioconductor-genomeinfodbdata 1.1.0 r341_0
        - bioconductor-genomicalignments 1.16.0 r341h470a237_0
        - bioconductor-genomicranges 1.32.7 r341h470a237_0
        - bioconductor-iranges 2.14.12 r341h470a237_0
        - bioconductor-limma 3.36.5 r341h470a237_0
        - bioconductor-rsamtools 1.32.3 r341hfc679d8_0
        - bioconductor-s4vectors 0.18.3 r341h470a237_0
        - bioconductor-shortread 1.38.0 r341hfc679d8_0
        - bioconductor-summarizedexperiment 1.10.1 r341_0
        - bioconductor-xvector 0.20.0 r341h470a237_0
        - bioconductor-zlibbioc 1.26.0 r341h470a237_0
        - bzip2 1.0.6 h470a237_2
        - ca-certificates 2018.10.15 ha4d7672_0
        - cairo 1.14.12 h276e583_5
        - curl 7.61.0 h93b3f91_2
        - fontconfig 2.13.1 h65d0f4c_0
        - freetype 2.9.1 h6debe1e_4
        - gettext 0.19.8.1 h5e8e0c9_1
        - glib 2.56.2 h464dc38_0
        - graphite2 1.3.12 hfc679d8_1
        - gsl 2.2.1 h0c605f7_3
        - harfbuzz 1.9.0 h04dbb29_1
        - icu 58.2 hfc679d8_0
        - jpeg 9c h470a237_1
        - krb5 1.14.6 0
        - libffi 3.2.1 hfc679d8_5
        - libgcc-ng 7.2.0 hdf63c60_3
        - libgfortran 3.0.0 1
        - libiconv 1.15 h470a237_3
        - libpng 1.6.35 ha92aebf_2
        - libssh2 1.8.0 h5b517e9_2
        - libstdcxx-ng 7.2.0 hdf63c60_3
        - libtiff 4.0.9 he6b73bb_2
        - libuuid 2.32.1 h470a237_2
        - libxcb 1.13 h470a237_2
        - libxml2 2.9.8 h422b904_5
        - ncurses 6.1 hfc679d8_1
        - openssl 1.0.2p h470a237_1
        - pango 1.40.14 he752989_2
        - pcre 8.41 hfc679d8_3
        - pixman 0.34.0 h470a237_3
        - pthread-stubs 0.4 h470a237_1
        - r-abind 1.4_5 r341h6115d3f_0
        - r-base 3.4.1 h4fe35fd_8
        - r-bh 1.66.0_1 r341_1
        - r-bitops 1.0_6 r341hc070d10_2
        - r-formatr 1.5 r341h6115d3f_1
        - r-futile.logger 1.4.3 r341h6115d3f_1
        - r-futile.options 1.0.1 r341h6115d3f_0
        - r-hwriter 1.3.2 r341h6115d3f_1
        - r-lambda.r 1.2.3 r341h6115d3f_0
        - r-lattice 0.20_35 r341hc070d10_0
        - r-latticeextra 0.6_28 r341h6115d3f_1
        - r-locfit 1.5_9.1 r341h470a237_2
        - r-matrix 1.2_14 r341hc070d10_2
        - r-matrixstats 0.54.0 r341hc070d10_0
        - r-rcolorbrewer 1.1_2 r341h6115d3f_1
        - r-rcpp 0.12.17 r341h9d2a408_2
        - r-rcurl 1.95_4.11 r341h86b9717_2
        - r-snow 0.4_3 r341h6115d3f_0
        - readline 7.0 haf1bffa_1
        - tk 8.6.8 ha92aebf_0
        - wget 1.19.5 h1ad7b7a_0
        - xorg-kbproto 1.0.7 h470a237_2
        - xorg-libice 1.0.9 h470a237_4
        - xorg-libsm 1.2.3 h8c8a85c_0
        - xorg-libx11 1.6.6 h470a237_0
        - xorg-libxau 1.0.8 h470a237_6
        - xorg-libxdmcp 1.1.2 h470a237_7
        - xorg-libxext 1.3.3 h470a237_4
        - xorg-libxrender 0.9.10 h470a237_2
        - xorg-libxt 1.1.5 h470a237_2
        - xorg-renderproto 0.11.1 h470a237_2
        - xorg-xextproto 7.3.0 h470a237_2
        - xorg-xproto 7.0.31 h470a237_7
        - xz 5.2.4 h470a237_1
        - zlib 1.2.11 h470a237_3
    run:
        - bioconductor-bayseq >=2.14.0,<2.16.0
        - bioconductor-genomeinfodb >=1.16.0,<1.18.0
        - bioconductor-genomicranges >=1.32.7,<1.34.0
        - bioconductor-iranges >=2.14.12,<2.16.0
        - bioconductor-rsamtools >=1.32.3,<1.34.0
        - bioconductor-s4vectors >=0.18.3,<0.20.0
        - bioconductor-shortread >=1.38.0,<1.40.0
        - r-abind
        - r-base >=3.4.1,<3.4.2.0a0
test:
    commands:
        - $R -e "library('segmentSeq')"
about:
    home: http://bioconductor.org/packages/3.7/bioc/html/segmentSeq.html
    license: GPL-3
    summary: High-throughput sequencing technologies allow the production of large
        volumes of short sequences, which can be aligned to the genome to create a
        set of matches to the genome. By looking for regions of the genome which to
        which there are high densities of matches, we can infer a segmentation of
        the genome into regions of biological significance. The methods in this package
        allow the simultaneous segmentation of data from multiple samples, taking
        into account replicate data, in order to create a consensus segmentation.
        This has obvious applications in a number of classes of sequencing experiments,
        particularly in the discovery of small RNA loci and novel mRNA transcriptome
        discovery.
extra:
    copy_test_source_files: true
    final: true
    identifiers:
        - biotools:segmentseq
        - doi:10.1093/bioinformatics/btr687
