# Cell type annotation for unannotated single-cell RNA-Seq data

## Documentation for package ‘scTGIF’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

scTGIF-package | Cell type annotation for unannotated single-cell RNA-Seq data
calcTGIF | Function for connecting cellular patterns and functional patterns using jNMF
calcTGIF-method | Function for connecting cellular patterns and functional patterns using jNMF
cellMarkerToGmt | A function to convert the CellMarker data to GMT files.
convertRowID | A function to change the row names of a matrix.
DistalLungEpithelium | Gene expression matrix of DistalLungEpithelium dataset containing five cluster.
label.DistalLungEpithelium | Cellular label of DistalLungEpithelium dataset containing five cluster.
pca.DistalLungEpithelium | The result of PCA of the DistalLungEpithelium dataset.
reportTGIF | Function for reporting the result of 'calcTGIF' function
reportTGIF-method | Function for reporting the result of 'calcTGIF' function
scTGIF | Cell type annotation for unannotated single-cell RNA-Seq data
settingTGIF | Paramter setting for scTGIF
settingTGIF-method | Paramter setting for scTGIF