# Normalization of single cell RNA-seq data

## Documentation for package ‘SCnorm’ version 1.0.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Package NEWS.

## Help Pages

correctWithin | correctWithin
evaluateK | Evaluate normalization using K slope groups
ExampleSimSCData | Example datasets for SCnorm
generateEvalPlot | Internal plotting function.
getCounts | getCounts
getDens | getDens
getSlopes | Estimate gene specific count-depth relationships
GetTD | Fit group regression for specific quantile and degree
normWrapper | Iteratively fit group regression and evaluate to choose optimal K
plotCountDepth | Evaluate the count-depth relationship before (or after) normalizing the data.
plotWithinFactor | Evaluate gene-specific factors in the the data.
quickReg | quickReg
redoBox | redoBox
results | results
scaleNormMultCont | Scale multiple conditions
SCnorm | SCnorm
SCnormFit | Fit group quantile regression for K groups
splitGroups | splitGroups