Package: scfind
Type: Package
Title: A search tool for single cell RNA-seq data by gene lists
Version: 1.8.0
Author: Vladimir Kiselev
Maintainer: Vladimir Kiselev <vladimir.yu.kiselev@gmail.com>
Authors@R: c(person("Vladimir", "Kiselev",
             email = "vladimir.yu.kiselev@gmail.com",
             role=c("cre", "aut")),
             person("Martin", "Hemberg",
             role=c("aut")))
Description: Recently a very large collection of single-cell RNA-seq (scRNA-seq) datasets 
             has been generated and publicly released. For the collection to be 
             useful, the information must be organized in a way that supports 
             queries that are relevant to researchers. `scfind` builds an index 
             from scRNA-seq datasets which organizes the information in a suitable
             and compact manner so that the datasets can be very efficiently 
             searched for either cells or cell types in which a given list of 
             genes is expressed.
License: GPL-3
Imports: SingleCellExperiment, SummarizedExperiment, methods, stats,
        bit, dplyr, hash, reshape2, Rcpp(>= 0.12.12)
LinkingTo: Rcpp
Depends: R(>= 3.4)
Encoding: UTF-8
LazyData: true
RoxygenNote: 6.0.1
Suggests: knitr, rmarkdown, testthat
VignetteBuilder: knitr
biocViews: ImmunoOncology, SingleCell, Software, RNASeq,
        Transcriptomics, DataRepresentation, Transcription, Sequencing,
        GeneExpression
NeedsCompilation: yes
URL: https://github.com/hemberg-lab/scfind
BugReports: https://support.bioconductor.org/t/scfind/
git_url: https://git.bioconductor.org/packages/scfind
git_branch: RELEASE_3_10
git_last_commit: 684ee78
git_last_commit_date: 2019-10-29
Date/Publication: 2019-10-29
Packaged: 2019-10-30 02:43:21 UTC; biocbuild
Built: R 3.6.1; x86_64-conda_cos6-linux-gnu; 2019-11-03 08:48:37 UTC; unix
