{
  "channels": [
    "file:///opt/host-conda-bld",
    "https://conda.anaconda.org/conda-forge",
    "https://conda.anaconda.org/bioconda",
    "https://repo.anaconda.com/pkgs/main",
    "https://conda.anaconda.org/conda-forge",
    "https://conda.anaconda.org/bioconda",
    "https://repo.anaconda.com/pkgs/main"
  ],
  "conda_build_version": "3.21.4",
  "conda_private": false,
  "conda_version": "4.8.4",
  "description": "The scde package implements a set of statistical methods for analyzing single-cell RNA-seq data. scde fits individual error models for single-cell RNA-seq measurements. These models can then be used for assessment of differential expression between groups of cells, as well as other types of analysis. The scde package also contains the pagoda framework which applies pathway and gene set overdispersion analysis to identify and characterize putative cell subpopulations based on transcriptional signatures. The overall approach to the differential expression analysis is detailed in the following publication: \"Bayesian approach to single-cell differential expression analysis\" (Kharchenko PV, Silberstein L, Scadden DT, Nature Methods, doi: 10.1038/nmeth.2967). The overall approach to subpopulation identification and characterization is detailed in the following pre-print: \"Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis\" (Fan J, Salathia N, Liu R, Kaeser G, Yung Y, Herman J, Kaper F, Fan JB, Zhang K, Chun J, and Kharchenko PV, Nature Methods, doi:10.1038/nmeth.3734).",
  "env_vars": {
    "CIO_TEST": "<not set>"
  },
  "extra": {
    "copy_test_source_files": true,
    "final": true,
    "identifiers": [
      "biotools:scde",
      "doi:10.1038/nmeth.2967"
    ],
    "parent_recipe": {
      "name": "bioconductor-scde",
      "path": "recipes/bioconductor-scde",
      "version": "2.8.0"
    }
  },
  "home": "https://bioconductor.org/packages/3.14/bioc/html/scde.html",
  "identifiers": [],
  "keywords": [],
  "license": "GPL-2",
  "license_file": "/opt/conda/conda-bld/bioconductor-scde_1635933503318/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/R/share/licenses/GPL-2",
  "root_pkgs": [
    "tk 8.6.10 h21135ba_1",
    "patch 2.7.6 h7f98852_1002",
    "perl 5.32.0 h36c2ea0_0",
    "icu 68.1 h58526e2_0",
    "xz 5.2.5 h516909a_1",
    "ld_impl_linux-64 2.35.1 hea4e1c9_2",
    "patchelf 0.11 he1b5a44_0",
    "libedit 3.1.20191231 he28a2e2_2",
    "libiconv 1.16 h516909a_0",
    "lzo 2.10 h516909a_1000",
    "pytz 2021.1 pyhd8ed1ab_0",
    "clyent 1.2.2 py_1",
    "_openmp_mutex 4.5 1_gnu",
    "_libgcc_mutex 0.1 conda_forge",
    "nbformat 5.1.3 pyhd8ed1ab_0",
    "wheel 0.36.2 pyhd3deb0d_0",
    "bzip2 1.0.8 h7f98852_4",
    "zstd 1.4.9 ha95c52a_0",
    "libgcc-ng 9.3.0 h2828fa1_19",
    "soupsieve 2.0.1 py_1",
    "zlib 1.2.11 h516909a_1010",
    "libev 4.33 h516909a_1",
    "ncurses 6.2 h58526e2_4",
    "expat 2.3.0 h9c3ff4c_0",
    "filelock 3.0.12 pyh9f0ad1d_0",
    "zipp 3.4.1 pyhd8ed1ab_0",
    "pip 21.1.1 pyhd8ed1ab_0",
    "liblief 0.10.1 he1b5a44_2",
    "libxml2 2.9.12 h72842e0_0",
    "ripgrep 12.1.1 h516909a_1",
    "python-dateutil 2.8.1 py_0",
    "libstdcxx-ng 9.3.0 h6de172a_19",
    "attrs 21.2.0 pyhd8ed1ab_0",
    "traitlets 5.0.5 py_0",
    "yaml 0.2.5 h516909a_0",
    "tini 0.18.0 h14c3975_1001",
    "glob2 0.7 py_0",
    "lz4-c 1.9.3 h9c3ff4c_0",
    "six 1.16.0 pyh6c4a22f_0",
    "libgomp 9.3.0 h2828fa1_19",
    "ca-certificates 2020.12.5 ha878542_0",
    "pcre 8.44 he1b5a44_0",
    "pycparser 2.20 pyh9f0ad1d_2",
    "su-exec 0.2 h516909a_1002",
    "ipython_genutils 0.2.0 py_1",
    "c-ares 1.17.1 h7f98852_1",
    "pkginfo 1.7.0 pyhd8ed1ab_0",
    "typing-extensions 3.7.4.3 0",
    "libgfortran5 9.3.0 hff62375_19",
    "certifi 2020.12.5 py37h89c1867_1",
    "libopenblas 0.3.15 pthreads_h8fe5266_1",
    "skopeo 0.1.35 haa36a5b_1",
    "sphinxcontrib-jsmath 1.0.1 py_0",
    "pygments 2.9.0 pyhd8ed1ab_0",
    "babel 2.9.1 pyh44b312d_0",
    "conda-package-handling 1.7.3 py37h5e8e339_0",
    "uritemplate 3.0.1 py_0",
    "prompt_toolkit 3.0.18 hd8ed1ab_0",
    "backports 1.0 py_2",
    "idna 2.8 py37_1000",
    "alabaster 0.7.12 py_0",
    "gitdb2 3.0.2 py_0",
    "smmap2 3.0.1 py_0",
    "vine 5.0.0 pyhd8ed1ab_1",
    "click 8.0.0 py37h89c1867_0",
    "sphinxcontrib-serializinghtml 1.1.5 pyhd8ed1ab_0",
    "galaxy-lib 19.5.2 pyh864c0ab_1",
    "pycosat 0.6.3 py37h5e8e339_1006",
    "libcblas 3.9.0 9_openblas",
    "python-libarchive-c 3.0 py37h89c1867_0",
    "jinja2 2.10.3 py_0",
    "git 2.14.2 1",
    "billiard 3.6.4.0 py37h5e8e339_0",
    "regex 2018.08.29 py37h14c3975_1000",
    "sphinx-autodoc-typehints 1.12.0 pyhd8ed1ab_0",
    "imagesize 1.2.0 py_0",
    "celery 5.0.5 pyhd8ed1ab_0",
    "cffi 1.14.4 py37h11fe52a_0",
    "conda-forge-pinning 2021.05.28.18.39.39 hd8ed1ab_0",
    "sphinx 4.0.2 pyh6c4a22f_1",
    "jsonschema 2.6.0 py37_1002",
    "colorlog 3.1.4 py37_1000",
    "involucro 1.1.2 he881be0_3",
    "setuptools 49.6.0 py37h89c1867_3",
    "click-didyoumean 0.0.3 pyh8c360ce_0",
    "requests 2.22.0 py37_1",
    "anaconda-client 1.6.14 py_0",
    "conda-build 3.21.4 py37h89c1867_0",
    "pandas 0.23.4 py37h637b7d7_1000",
    "cachetools 3.0.0 py_0",
    "libblas 3.9.0 9_openblas",
    "urllib3 1.25.8 py37hc8dfbb8_1",
    "sphinxcontrib-qthelp 1.0.3 py_0",
    "pyparsing 2.4.7 pyh9f0ad1d_0",
    "importlib_metadata 1.5.0 py37_0",
    "smmap 4.0.0 pyhd8ed1ab_1",
    "docutils 0.17.1 py37h89c1867_0",
    "typing_extensions 3.7.4.3 py_0",
    "liblapack 3.9.0 9_openblas",
    "conda-verify 3.1.1 py37h89c1867_1003",
    "gidgethub 3.0.0 py_0",
    "sphinxcontrib-htmlhelp 2.0.0 pyhd8ed1ab_0",
    "click-plugins 1.1.1 py_0",
    "beautifulsoup4 4.6.3 py37_1000",
    "ruamel_yaml 0.15.80 py37h5e8e339_1004",
    "tqdm 4.61.0 pyhd8ed1ab_0",
    "backoff 1.6.0 py_1",
    "pyopenssl 19.0.0 py37_0",
    "multidict 4.7.5 py37h5e8e339_2",
    "click-repl 0.1.6 py_0",
    "python 3.7.1 hd21baee_1001",
    "amqp 5.0.6 pyhd8ed1ab_0",
    "boltons 18.0.1 py_0",
    "kombu 5.0.2 py37h89c1867_2",
    "openssl 1.0.2u h516909a_0",
    "libgfortran-ng 9.3.0 hff62375_19",
    "simplejson 3.17.2 py37h5e8e339_2",
    "conda 4.8.4 py37hc8dfbb8_2",
    "curl 7.52.1 0",
    "pysocks 1.7.1 py37h89c1867_3",
    "colorama 0.4.4 pyh9f0ad1d_0",
    "jupyter_core 4.7.1 py37h89c1867_0",
    "numpy 1.19.5 py37haa41c4c_1",
    "sqlalchemy 1.3.23 py37h5e8e339_0",
    "gitpython 3.0.8 py_0",
    "yarl 1.6.3 py37h5e8e339_1",
    "networkx 1.11 py37_1",
    "readline 7.0 hf8c457e_1001",
    "async-timeout 3.0.1 py_1000",
    "future 0.18.2 py37h89c1867_3",
    "aiohttp 3.4.4 py37h14c3975_1000",
    "pyyaml 5.4.1 py37h5e8e339_0",
    "packaging 20.9 pyh44b312d_0",
    "prompt-toolkit 3.0.18 pyha770c72_0",
    "py-lief 0.10.1 py37hb892b2f_2",
    "snowballstemmer 2.1.0 pyhd8ed1ab_0",
    "libarchive 3.3.3 ha149a29_1000",
    "markupsafe 2.0.1 py37h5e8e339_0",
    "aioftp 0.12.0 py_0",
    "asn1crypto 1.4.0 pyh9f0ad1d_0",
    "sqlite 3.28.0 h8b20d00_0",
    "wcwidth 0.2.5 pyh9f0ad1d_2",
    "backports.functools_lru_cache 1.6.4 pyhd8ed1ab_0",
    "pyaml 17.12.1 py_0",
    "cryptography 2.5 py37hb7f436b_1",
    "aiofiles 0.4.0 py_1001",
    "sphinxcontrib-devhelp 1.0.2 py_0",
    "libffi 3.2.1 he1b5a44_1007",
    "python_abi 3.7 1_cp37m",
    "chardet 3.0.4 py37he5f6b98_1008",
    "decorator 5.0.9 pyhd8ed1ab_0",
    "psutil 5.8.0 py37h5e8e339_1",
    "pyjwt 1.7.1 py_0",
    "sphinxcontrib-applehelp 1.0.2 py_0",
    "argh 0.26.2 pyh9f0ad1d_1002"
  ],
  "summary": "Single Cell Differential Expression",
  "tags": []
}