# This file created by conda-build 24.7.1
# meta.yaml template originally from:
# /opt/recipe, last modified Sat Dec 14 13:52:34 2024
# ------------------------------------------------

package:
  name: bioconductor-samspectral
  version: 1.60.0
source:
  md5: dc3da48feb16c796c61a290b9e10708f
  url:
    - https://bioarchive.galaxyproject.org/SamSPECTRAL_1.60.0.tar.gz
    - https://bioconductor.org/packages/3.20/bioc/src/contrib/Archive/SamSPECTRAL/SamSPECTRAL_1.60.0.tar.gz
    - https://bioconductor.org/packages/3.20/bioc/src/contrib/SamSPECTRAL_1.60.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-samspectral/bioconductor-samspectral_1.60.0_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-samspectral >=1.60.0,<1.61.0a0
  string: r44h3df3fcb_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - binutils_linux-64 2.43 h4852527_2
    - gcc_impl_linux-64 13.3.0 hfea6d02_1
    - gcc_linux-64 13.3.0 hc28eda2_7
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - ld_impl_linux-64 2.43 h712a8e2_2
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 13.3.0 h84ea5a7_101
    - libgomp 14.2.0 h77fa898_1
    - libsanitizer 13.3.0 heb74ff8_1
    - libstdcxx 14.2.0 hc0a3c3a_1
    - make 4.4.1 hb9d3cd8_2
    - sysroot_linux-64 2.17 h4a8ded7_18
    - tzdata 2024b hc8b5060_0
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.43 h4bf12b8_2
    - bwidget 1.10.1 ha770c72_0
    - bzip2 1.0.8 h4bc722e_7
    - c-ares 1.34.3 hb9d3cd8_1
    - ca-certificates 2024.8.30 hbcca054_0
    - cairo 1.18.2 h3394656_1
    - curl 8.11.1 h332b0f4_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 h77eed37_3
    - fontconfig 2.15.0 h7e30c49_1
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h267a509_2
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 14.2.0 h6b349bd_1
    - gfortran_impl_linux-64 14.2.0 hc73f493_1
    - graphite2 1.3.13 h59595ed_1003
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 14.2.0 h2c03514_1
    - harfbuzz 9.0.0 hda332d3_1
    - icu 75.1 he02047a_0
    - kernel-headers_linux-64 3.10.0 he073ed8_18
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.3 h659f571_0
    - ld_impl_linux-64 2.43 h712a8e2_2
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 8_h3b12eaf_netlib
    - libcblas 3.9.0 8_h3b12eaf_netlib
    - libcurl 8.11.1 h332b0f4_0
    - libdeflate 1.22 hb9d3cd8_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 hd590300_2
    - libexpat 2.6.4 h5888daf_0
    - libffi 3.4.2 h7f98852_5
    - libgcc 14.2.0 h77fa898_1
    - libgcc-devel_linux-64 14.2.0 h41c2201_101
    - libgcc-ng 14.2.0 h69a702a_1
    - libgfortran 14.2.0 h69a702a_1
    - libgfortran-ng 14.2.0 h69a702a_1
    - libgfortran5 14.2.0 hd5240d6_1
    - libglib 2.82.2 h2ff4ddf_0
    - libgomp 14.2.0 h77fa898_1
    - libiconv 1.17 hd590300_2
    - libjpeg-turbo 3.0.0 hd590300_1
    - liblapack 3.9.0 8_h3b12eaf_netlib
    - liblzma 5.6.3 hb9d3cd8_1
    - liblzma-devel 5.6.3 hb9d3cd8_1
    - libnghttp2 1.64.0 h161d5f1_0
    - libpng 1.6.44 hadc24fc_0
    - libsanitizer 14.2.0 h2a3dede_1
    - libssh2 1.11.1 hf672d98_0
    - libstdcxx 14.2.0 hc0a3c3a_1
    - libstdcxx-devel_linux-64 14.2.0 h41c2201_101
    - libstdcxx-ng 14.2.0 h4852527_1
    - libtiff 4.7.0 hc4654cb_2
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.4.0 hd590300_0
    - libxcb 1.17.0 h8a09558_0
    - libzlib 1.3.1 hb9d3cd8_2
    - make 4.4.1 hb9d3cd8_2
    - ncurses 6.5 he02047a_1
    - openssl 3.4.0 hb9d3cd8_0
    - pango 1.54.0 h3a902e7_3
    - pcre2 10.44 hba22ea6_2
    - pixman 0.44.2 h29eaf8c_0
    - pthread-stubs 0.4 hb9d3cd8_1002
    - r-base 4.4.2 h64c9cd0_0
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.17 h4a8ded7_18
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h8bc8fbc_6
    - tzdata 2024b hc8b5060_0
    - xorg-libice 1.1.1 hb9d3cd8_1
    - xorg-libsm 1.2.4 he73a12e_1
    - xorg-libx11 1.8.10 h4f16b4b_1
    - xorg-libxau 1.0.11 hb9d3cd8_1
    - xorg-libxdmcp 1.1.5 hb9d3cd8_0
    - xorg-libxext 1.3.6 hb9d3cd8_0
    - xorg-libxrender 0.9.11 hb9d3cd8_2
    - xorg-libxt 1.3.1 hb9d3cd8_0
    - xz 5.6.3 hbcc6ac9_1
    - xz-gpl-tools 5.6.3 hbcc6ac9_1
    - xz-tools 5.6.3 hb9d3cd8_1
    - zstd 1.5.6 ha6fb4c9_0
  run:
    - libblas >=3.9.0,<4.0a0
    - libgcc >=13
    - liblapack >=3.9.0,<4.0a0
    - r-base >=4.4,<4.5.0a0
    - r-base >=4.4,<4.5.0a0
test:
  commands:
    - $R -e "library('SamSPECTRAL')"
about:
  description: Samples large data such that spectral clustering is possible while
    preserving density information in edge weights. More specifically, given a matrix
    of coordinates as input, SamSPECTRAL first builds the communities to sample the
    data points. Then, it builds a graph and after weighting the edges by conductance
    computation, the graph is passed to a classic spectral clustering algorithm to
    find the spectral clusters. The last stage of SamSPECTRAL is to combine the spectral
    clusters. The resulting "connected components" estimate biological cell populations
    in the data. See the vignette for more details on how to use this package, some
    illustrations, and simple examples.
  home: https://bioconductor.org/packages/3.20/bioc/html/SamSPECTRAL.html
  license: GPL (>= 2)
  license_file: /opt/conda/conda-bld/bioconductor-samspectral_1734193430909/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehol/lib/R/share/licenses/GPL-3
  summary: Identifies cell population in flow cytometry data
extra:
  copy_test_source_files: true
  final: true
