# This file created by conda-build 3.21.4
# meta.yaml template originally from:
# /opt/recipe, last modified Wed Mar 31 07:06:01 2021
# ------------------------------------------------

package:
  name: bioconductor-rqc
  version: 1.24.0
source:
  md5: 8d9700db247960b4e8f323cb6987afcf
  url:
    - https://bioarchive.galaxyproject.org/Rqc_1.24.0.tar.gz
    - https://bioconductor.org/packages/3.12/bioc/src/contrib/Rqc_1.24.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-rqc/bioconductor-rqc_1.24.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r40h399db7b_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - gcc_impl_linux-64 9.3.0 h70c0ae5_18
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gxx_impl_linux-64 9.3.0 hd87eabc_18
    - gxx_linux-64 9.3.0 h3fbe746_30
    - kernel-headers_linux-64 2.6.32 h77966d4_13
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_18
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgomp 9.3.0 h2828fa1_18
    - libstdcxx-devel_linux-64 9.3.0 hb016644_18
    - libstdcxx-ng 9.3.0 h6de172a_18
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 h77966d4_13
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 1_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.35.1 h193b22a_2
    - binutils_linux-64 2.35 h67ddf6f_30
    - bioconductor-annotationdbi 1.52.0 r40hdfd78af_1
    - bioconductor-annotationfilter 1.14.0 r40hdfd78af_1
    - bioconductor-biobase 2.50.0 r40hd029910_1
    - bioconductor-biocfilecache 1.14.0 r40hdfd78af_1
    - bioconductor-biocgenerics 0.36.0 r40hdfd78af_1
    - bioconductor-biocparallel 1.24.1 r40h399db7b_0
    - bioconductor-biocstyle 2.18.1 r40hdfd78af_0
    - bioconductor-biomart 2.46.3 r40hdfd78af_0
    - bioconductor-biostrings 2.58.0 r40hd029910_1
    - bioconductor-biovizbase 1.38.0 r40h037d062_0
    - bioconductor-bsgenome 1.58.0 r40_0
    - bioconductor-delayedarray 0.16.3 r40hd029910_0
    - bioconductor-ensembldb 2.14.0 r40hdfd78af_1
    - bioconductor-genomeinfodb 1.26.4 r40hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.4 r40hdfd78af_1
    - bioconductor-genomicalignments 1.26.0 r40hd029910_1
    - bioconductor-genomicfeatures 1.42.0 r40_0
    - bioconductor-genomicfiles 1.26.0 r40_0
    - bioconductor-genomicranges 1.42.0 r40hd029910_1
    - bioconductor-iranges 2.24.1 r40hd029910_0
    - bioconductor-matrixgenerics 1.2.1 r40hdfd78af_0
    - bioconductor-protgenerics 1.22.0 r40hdfd78af_1
    - bioconductor-rhtslib 1.22.0 r40hd029910_1
    - bioconductor-rsamtools 2.6.0 r40h399db7b_1
    - bioconductor-rtracklayer 1.50.0 r40h7f5ccec_2
    - bioconductor-s4vectors 0.28.1 r40hd029910_0
    - bioconductor-shortread 1.48.0 r40h399db7b_1
    - bioconductor-summarizedexperiment 1.20.0 r40hdfd78af_1
    - bioconductor-variantannotation 1.36.0 r40h037d062_0
    - bioconductor-xvector 0.30.0 r40hd029910_1
    - bioconductor-zlibbioc 1.36.0 r40hd029910_1
    - bwidget 1.9.14 ha770c72_0
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.17.1 h7f98852_1
    - ca-certificates 2020.12.5 ha878542_0
    - cairo 1.16.0 h6cf1ce9_1008
    - curl 7.75.0 h979ede3_0
    - fontconfig 2.13.1 hba837de_1004
    - freetype 2.10.4 h0708190_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 9.3.0 h70c0ae5_18
    - gcc_linux-64 9.3.0 hf25ea35_30
    - gettext 0.19.8.1 h0b5b191_1005
    - gfortran_impl_linux-64 9.3.0 hc4a2995_18
    - gfortran_linux-64 9.3.0 hdc58fab_30
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.6 he838d99_2
    - gxx_impl_linux-64 9.3.0 hd87eabc_18
    - gxx_linux-64 9.3.0 h3fbe746_30
    - harfbuzz 2.8.0 h83ec7ef_1
    - icu 68.1 h58526e2_0
    - jpeg 9d h36c2ea0_0
    - kernel-headers_linux-64 2.6.32 h77966d4_13
    - krb5 1.17.2 h926e7f8_0
    - ld_impl_linux-64 2.35.1 hea4e1c9_2
    - libblas 3.8.0 11_h86c2bf4_netlib
    - libcblas 3.8.0 11_h86c2bf4_netlib
    - libcurl 7.75.0 hc4aaa36_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.3 h58526e2_2
    - libgcc-devel_linux-64 9.3.0 h7864c58_18
    - libgcc-ng 9.3.0 h2828fa1_18
    - libgfortran-ng 9.3.0 hff62375_18
    - libgfortran5 9.3.0 hff62375_18
    - libglib 2.68.0 h3e27bee_2
    - libgomp 9.3.0 h2828fa1_18
    - libiconv 1.16 h516909a_0
    - liblapack 3.8.0 11_h86c2bf4_netlib
    - libnghttp2 1.43.0 h812cca2_0
    - libpng 1.6.37 h21135ba_2
    - libssh2 1.9.0 ha56f1ee_6
    - libstdcxx-devel_linux-64 9.3.0 hb016644_18
    - libstdcxx-ng 9.3.0 h6de172a_18
    - libtiff 4.2.0 hdc55705_0
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.0 h7f98852_2
    - libxcb 1.13 h7f98852_1003
    - libxml2 2.9.10 h72842e0_3
    - lz4-c 1.9.3 h9c3ff4c_0
    - make 4.3 hd18ef5c_1
    - ncurses 6.2 h58526e2_4
    - openssl 1.1.1k h7f98852_0
    - pandoc 2.12 h7f98852_0
    - pango 1.48.4 hb8ff022_0
    - pcre 8.44 he1b5a44_0
    - pcre2 10.36 h032f7d1_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-acepack 1.4.1 r40h580db52_1006
    - r-askpass 1.1 r40hcdcec82_2
    - r-assertthat 0.2.1 r40h6115d3f_2
    - r-backports 1.2.1 r40hcfec24a_0
    - r-base 4.0.3 h349a78a_8
    - r-base64enc 0.1_3 r40hcdcec82_1004
    - r-bh 1.75.0_0 r40hc72bb7e_0
    - r-biocmanager 1.30.12 r40hc72bb7e_0
    - r-bit 4.0.4 r40hcdcec82_0
    - r-bit64 4.0.5 r40hcdcec82_0
    - r-bitops 1.0_6 r40hcdcec82_1004
    - r-blob 1.2.1 r40h6115d3f_1
    - r-bookdown 0.21 r40h142f84f_0
    - r-brio 1.1.1 r40hcfec24a_0
    - r-bslib 0.2.4 r40hc72bb7e_0
    - r-cachem 1.0.4 r40hcfec24a_0
    - r-callr 3.6.0 r40hc72bb7e_0
    - r-checkmate 2.0.0 r40hcdcec82_1
    - r-cli 2.3.1 r40hc72bb7e_0
    - r-cluster 2.1.1 r40h859d828_0
    - r-colorspace 2.0_0 r40h9e2df91_0
    - r-commonmark 1.7 r40hcdcec82_1002
    - r-crayon 1.4.1 r40hc72bb7e_0
    - r-curl 4.3 r40hcfec24a_1
    - r-data.table 1.14.0 r40hcfec24a_0
    - r-dbi 1.1.1 r40hc72bb7e_0
    - r-dbplyr 2.1.0 r40hc72bb7e_0
    - r-desc 1.3.0 r40hc72bb7e_0
    - r-dichromat 2.0_0 r40_2002
    - r-diffobj 0.3.3 r40hcfec24a_0
    - r-digest 0.6.27 r40h1b71b39_0
    - r-dplyr 1.0.5 r40h03ef668_0
    - r-ellipsis 0.3.1 r40hcdcec82_0
    - r-evaluate 0.14 r40h6115d3f_2
    - r-fansi 0.4.2 r40hcfec24a_0
    - r-farver 2.1.0 r40h03ef668_0
    - r-fastmap 1.1.0 r40h03ef668_0
    - r-foreign 0.8_81 r40hcfec24a_0
    - r-formatr 1.8 r40hc72bb7e_0
    - r-formula 1.2_4 r40h142f84f_0
    - r-fs 1.5.0 r40h0357c0b_0
    - r-futile.logger 1.4.3 r40h6115d3f_1003
    - r-futile.options 1.0.1 r40h6115d3f_1002
    - r-generics 0.1.0 r40hc72bb7e_0
    - r-ggplot2 3.3.3 r40hc72bb7e_0
    - r-glue 1.4.2 r40hcfec24a_0
    - r-gridextra 2.3 r40h6115d3f_1003
    - r-gtable 0.3.0 r40h6115d3f_3
    - r-highr 0.8 r40h6115d3f_2
    - r-hmisc 4.5_0 r40h859d828_0
    - r-hms 1.0.0 r40hc72bb7e_0
    - r-htmltable 2.1.0 r40h6115d3f_0
    - r-htmltools 0.5.1.1 r40h03ef668_0
    - r-htmlwidgets 1.5.3 r40hc72bb7e_0
    - r-httpuv 1.5.5 r40h03ef668_0
    - r-httr 1.4.2 r40h6115d3f_0
    - r-hwriter 1.3.2 r40h6115d3f_1003
    - r-isoband 0.2.4 r40h03ef668_0
    - r-jpeg 0.1_8.1 r40hcdcec82_1
    - r-jquerylib 0.1.3 r40hc72bb7e_0
    - r-jsonlite 1.7.2 r40hcfec24a_0
    - r-knitr 1.31 r40hc72bb7e_0
    - r-labeling 0.4.2 r40h142f84f_0
    - r-lambda.r 1.2.4 r40h6115d3f_1
    - r-later 1.1.0.1 r40h0357c0b_0
    - r-lattice 0.20_41 r40hcfec24a_3
    - r-latticeextra 0.6_29 r40h6115d3f_1
    - r-lazyeval 0.2.2 r40hcdcec82_2
    - r-lifecycle 1.0.0 r40hc72bb7e_0
    - r-magrittr 2.0.1 r40hcfec24a_1
    - r-markdown 1.1 r40hcfec24a_1
    - r-mass 7.3_53.1 r40hcfec24a_0
    - r-matrix 1.3_2 r40he454529_0
    - r-matrixstats 0.58.0 r40hcfec24a_0
    - r-memoise 2.0.0 r40hc72bb7e_0
    - r-mgcv 1.8_34 r40he454529_0
    - r-mime 0.10 r40hcfec24a_0
    - r-munsell 0.5.0 r40h6115d3f_1003
    - r-nlme 3.1_152 r40h859d828_0
    - r-nnet 7.3_15 r40hcfec24a_0
    - r-openssl 1.4.3 r40he5c4762_0
    - r-pillar 1.5.1 r40hc72bb7e_0
    - r-pkgbuild 1.2.0 r40hc72bb7e_0
    - r-pkgconfig 2.0.3 r40h6115d3f_1
    - r-pkgload 1.2.0 r40h03ef668_0
    - r-plogr 0.2.0 r40h6115d3f_1003
    - r-plyr 1.8.6 r40h0357c0b_1
    - r-png 0.1_7 r40hcdcec82_1004
    - r-praise 1.0.0 r40h6115d3f_1004
    - r-prettyunits 1.1.1 r40h6115d3f_1
    - r-processx 3.5.0 r40hcfec24a_0
    - r-progress 1.2.2 r40h6115d3f_2
    - r-promises 1.2.0.1 r40h03ef668_0
    - r-ps 1.6.0 r40hcfec24a_0
    - r-purrr 0.3.4 r40hcdcec82_1
    - r-r6 2.5.0 r40hc72bb7e_0
    - r-rappdirs 0.3.3 r40hcfec24a_0
    - r-rcolorbrewer 1.1_2 r40h6115d3f_1003
    - r-rcpp 1.0.6 r40h03ef668_0
    - r-rcurl 1.98_1.3 r40hcfec24a_0
    - r-rematch2 2.1.2 r40h6115d3f_1
    - r-reshape2 1.4.4 r40h0357c0b_1
    - r-rlang 0.4.10 r40hcfec24a_0
    - r-rmarkdown 2.7 r40hc72bb7e_0
    - r-rpart 4.1_15 r40hcfec24a_2
    - r-rprojroot 2.0.2 r40hc72bb7e_0
    - r-rsqlite 2.2.5 r40h03ef668_0
    - r-rstudioapi 0.13 r40hc72bb7e_0
    - r-sass 0.3.1 r40h03ef668_0
    - r-scales 1.1.1 r40h6115d3f_0
    - r-shiny 1.6.0 r40hc72bb7e_0
    - r-snow 0.4_3 r40h6115d3f_1002
    - r-sourcetools 0.1.7 r40he1b5a44_1002
    - r-stringi 1.5.3 r40hcabe038_1
    - r-stringr 1.4.0 r40h6115d3f_2
    - r-survival 3.2_10 r40hcfec24a_0
    - r-sys 3.4 r40hcdcec82_0
    - r-testthat 3.0.2 r40h03ef668_0
    - r-tibble 3.1.0 r40hcfec24a_1
    - r-tidyselect 1.1.0 r40h6115d3f_0
    - r-tinytex 0.31 r40hc72bb7e_0
    - r-utf8 1.2.1 r40hcfec24a_0
    - r-vctrs 0.3.7 r40hcfec24a_0
    - r-viridis 0.5.1 r40h6115d3f_1004
    - r-viridislite 0.3.0 r40h6115d3f_1003
    - r-waldo 0.2.5 r40hc72bb7e_0
    - r-withr 2.4.1 r40hc72bb7e_0
    - r-xfun 0.20 r40hcfec24a_0
    - r-xml 3.99_0.6 r40hcfec24a_0
    - r-xml2 1.3.2 r40h0357c0b_1
    - r-xtable 1.8_4 r40h6115d3f_3
    - r-yaml 2.2.1 r40hcfec24a_1
    - r-zeallot 0.1.0 r40h6115d3f_1002
    - readline 8.0 he28a2e2_2
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 h77966d4_13
    - tk 8.6.10 h21135ba_1
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.0 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.5 h516909a_1
    - zlib 1.2.11 h516909a_1010
    - zstd 1.4.9 ha95c52a_0
  run:
    - bioconductor-biocgenerics >=0.36.0,<0.37.0
    - bioconductor-biocparallel >=1.24.0,<1.25.0
    - bioconductor-biocstyle >=2.18.0,<2.19.0
    - bioconductor-biostrings >=2.58.0,<2.59.0
    - bioconductor-biovizbase >=1.38.0,<1.39.0
    - bioconductor-genomicalignments >=1.26.0,<1.27.0
    - bioconductor-genomicfiles >=1.26.0,<1.27.0
    - bioconductor-iranges >=2.24.0,<2.25.0
    - bioconductor-rsamtools >=2.6.0,<2.7.0
    - bioconductor-s4vectors >=0.28.0,<0.29.0
    - bioconductor-shortread >=1.48.0,<1.49.0
    - libblas >=3.8.0,<4.0a0
    - libgcc-ng >=9.3.0
    - liblapack >=3.8.0,<4.0a0
    - libstdcxx-ng >=9.3.0
    - r-base >=4.0,<4.1.0a0
    - r-ggplot2
    - r-knitr >=1.7
    - r-markdown
    - r-plyr
    - r-rcpp >=0.11.6
    - r-reshape2
    - r-shiny
test:
  commands:
    - $R -e "library('Rqc')"
about:
  description: Rqc is an optimised tool designed for quality control and assessment
    of high-throughput sequencing data. It performs parallel processing of entire
    files and produces a report which contains a set of high-resolution graphics.
  home: https://bioconductor.org/packages/3.12/bioc/html/Rqc.html
  license: GPL (>= 2)
  license_file: /opt/conda/conda-bld/bioconductor-rqc_1617184297393/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placeh/lib/R/share/licenses/GPL-3
  summary: Quality Control Tool for High-Throughput Sequencing Data
extra:
  copy_test_source_files: true
  final: true
