{% set version = "1.24.0" %}
{% set name = "Rqc" %}
{% set bioc = "3.12" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 8d9700db247960b4e8f323cb6987afcf
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: testthat
requirements:
  host:
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-biocparallel >=1.24.0,<1.25.0'
    - 'bioconductor-biocstyle >=2.18.0,<2.19.0'
    - 'bioconductor-biostrings >=2.58.0,<2.59.0'
    - 'bioconductor-biovizbase >=1.38.0,<1.39.0'
    - 'bioconductor-genomicalignments >=1.26.0,<1.27.0'
    - 'bioconductor-genomicfiles >=1.26.0,<1.27.0'
    - 'bioconductor-iranges >=2.24.0,<2.25.0'
    - 'bioconductor-rsamtools >=2.6.0,<2.7.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-shortread >=1.48.0,<1.49.0'
    - r-base
    - r-ggplot2
    - 'r-knitr >=1.7'
    - r-markdown
    - r-plyr
    - 'r-rcpp >=0.11.6'
    - r-reshape2
    - r-shiny
    - libblas
    - liblapack
  run:
    - 'bioconductor-biocgenerics >=0.36.0,<0.37.0'
    - 'bioconductor-biocparallel >=1.24.0,<1.25.0'
    - 'bioconductor-biocstyle >=2.18.0,<2.19.0'
    - 'bioconductor-biostrings >=2.58.0,<2.59.0'
    - 'bioconductor-biovizbase >=1.38.0,<1.39.0'
    - 'bioconductor-genomicalignments >=1.26.0,<1.27.0'
    - 'bioconductor-genomicfiles >=1.26.0,<1.27.0'
    - 'bioconductor-iranges >=2.24.0,<2.25.0'
    - 'bioconductor-rsamtools >=2.6.0,<2.7.0'
    - 'bioconductor-s4vectors >=0.28.0,<0.29.0'
    - 'bioconductor-shortread >=1.48.0,<1.49.0'
    - r-base
    - r-ggplot2
    - 'r-knitr >=1.7'
    - r-markdown
    - r-plyr
    - 'r-rcpp >=0.11.6'
    - r-reshape2
    - r-shiny
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'GPL (>= 2)'
  summary: 'Quality Control Tool for High-Throughput Sequencing Data'
  description: 'Rqc is an optimised tool designed for quality control and assessment of high-throughput sequencing data. It performs parallel processing of entire files and produces a report which contains a set of high-resolution graphics.'
  license_file: '{{ environ["PREFIX"] }}/lib/R/share/licenses/GPL-3'

