.msmsWorkspace	msmsWorkspace-class
.parseTitleString	dot-parseTitleString
.RmbSpectrum2	RmbSpectrum2-class
.updateObject.RmbSpectrum2.formulaSource	dot-updateObject.RmbSpectrum2.formulaSource
add.formula	add.formula
addMB	addMB
addPeaks	addPeaks
addPeaksManually	addPeaksManually
addProperty	addProperty
addProperty,data.frame,character,character-method	addProperty
addProperty,RmbSpectrum2,character,character-method	addProperty
aggregateSpectra	aggregateSpectra
analyzeMsMs	analyzeMsMs
analyzeMsMs.formula	analyzeMsMs
analyzeMsMs.intensity	analyzeMsMs
annotator.default	annotator.default
archiveResults	archiveResults
buildRecord	buildRecord
buildRecord,RmbSpectraSet-method	buildRecord
buildRecord,RmbSpectrum2-method	buildRecord
CAS2SMILES	CAS2SMILES
checkIsotopes	checkIsotopes
checkSpectra	checkSpectra
checkSpectra,RmbSpectraSet,character-method	checkSpectra
cleanElnoise	cleanElnoise
cleanElnoise,RmbSpectrum2List,numeric,numeric-method	selectPeaks
combineMultiplicities	combineMultiplicities
compoundlist2SDF	compoundlist2SDF
createCompoundlist	createCompoundlist
createMolfile	createMolfile
CTS.externalIdSubset	CTS.externalIdSubset
CTS.externalIdTypes	CTS.externalIdTypes
dbe	dbe
deprofile	deprofile
deprofile.fwhm	deprofile
deprofile.localMax	deprofile
deprofile.scan	deprofile
deprofile.spline	deprofile
exportMassbank	exportMassbank
fillback	fillback
fillback,msmsWorkspace,missing,missing-method	fillback
fillback,RmbSpectraSet,missing,data.frame-method	fillback
fillback,RmbSpectrum2,character,data.frame-method	fillback
filterCompoundlist	filterCompoundlist
filterLowaccResults	filterLowaccResults
filterMultiplicity	filterMultiplicity
filterPeakSatellites	filterPeakSatellites
filterPeaksMultiplicity	filterPeaksMultiplicity
findCAS	findMz
findEIC	findEIC
findFormula	findMz
findLevel	findMz
findMass	findMass
findMsMsHR	findMsMsHR
findMsMsHR.direct	findMsMsHR.direct
findMsMsHR.mass	findMsMsHR
findMsMsHR.ticMS2	findMsMsHR.ticms2
findMsMsHR.ticms2	findMsMsHR.ticms2
findMsMsHRperMsp	findMsMsHRperMsp
findMsMsHRperMsp.direct	findMsMsHRperMsp
findMsMsHRperxcms	findMsMsHRperxcms
findMsMsHRperxcms.direct	findMsMsHRperxcms
findMz	findMz
findMz.formula	findMz.formula
findName	findMz
findProgress	findProgress
findRt	findMz
findSmiles	findMz
flatten	flatten
formulastring.to.list	formulastring.to.list
gatherCompound	getAnalyticalInfo
gatherData	gatherData
gatherDataBabel	gatherDataBabel
gatherDataUnknown	gatherDataUnknown
gatherPubChem	gatherPubChem
gatherSpectrum	getAnalyticalInfo
getAnalyticalInfo	getAnalyticalInfo
getCactus	getCactus
getCompTox	getCompTox
getCSID	getCSID
getCtsKey	getCtsKey
getCtsRecord	getCtsRecord
getData	getData
getData,RmbSpectrum2-method	getData
getField	getField
getMolecule	getMolecule
getPcId	getPcId
is.valid.formula	is.valid.formula
list.to.formula	formulastring.to.list
loadInfolist	loadInfolists
loadInfolists	loadInfolists
loadList	loadList
loadMsmsWorkspace	newMsmsWorkspace
loadRmbSettings	RmbDefaultSettings
loadRmbSettingsFromEnv	RmbDefaultSettings
makeMollist	makeMollist
makePeaksCache	makePeaksCache
makeRecalibration	makeRecalibration
mbWorkflow	mbWorkflow
mbWorkspace-class	mbWorkspace-class
mergePeaks	mergePeaks
mergePeaks,data.frame-method	mergePeaks
mergePeaks,matrix-method	mergePeaks
mergePeaks,RmbSpectrum2-method	mergePeaks
mergePeaks,Spectrum-method	mergePeaks
mergeSpectra	mergeSpectra
mergeSpectra,RmbSpectrum2List-method	mergeSpectra
msmsRead	msmsRead
msmsRead.RAW	msmsRead.RAW
msmsWorkflow	msmsWorkflow
msmsWorkspace-class	msmsWorkspace-class
multiply.formula	add.formula
newMbWorkspace	newMbWorkspace
newMsmsWorkspace	newMsmsWorkspace
order.formula	order.formula
parseMassBank	parseMassBank
parseMbRecord	parseMbRecord
peaksMatched	peaksMatched
peaksMatched,data.frame-method	peaksMatched
peaksMatched,msmsWorkspace-method	peaksMatched
peaksUnmatched	peaksUnmatched
peaksUnmatched,data.frame-method	peaksUnmatched
peaksUnmatched,msmsWorkspace-method	peaksUnmatched
plotMbWorkspaces	plotMbWorkspaces
plotRecalibration	plotRecalibration
plotRecalibration.direct	plotRecalibration
ppm	ppm
problematicPeaks	problematicPeaks
processProblematicPeaks	processProblematicPeaks
progressBarHook	progressBarHook
property	property
property,RmbSpectrum2,character-method	property
property<-	property-set
property<-,RmbSpectrum2,character,logical,character-method	property-set
property<-,RmbSpectrum2,character,logical,missing-method	property-set
property<-,RmbSpectrum2,character,missing,character-method	property-set
property<-,RmbSpectrum2,character,missing,missing-method	property-set
readMbdata	flatten
reanalyzeFailpeak	reanalyzeFailpeaks
reanalyzeFailpeaks	reanalyzeFailpeaks
recalibrate	recalibrate
recalibrate.addMS1data	recalibrate.addMS1data
recalibrate.identity	recalibrate
recalibrate.linear	recalibrate
recalibrate.loess	recalibrate
recalibrate.mean	recalibrate
recalibrateSingleSpec	makeRecalibration
recalibrateSpectra	makeRecalibration
resetInfolists	loadInfolists
resetList	loadList
RmbDefaultSettings	RmbDefaultSettings
RmbSettings	RmbSettings
RmbSettingsTemplate	RmbDefaultSettings
RmbSpectrum2-class	RmbSpectrum2-class
rmb_log_debug	rmb_log_debug
rmb_log_error	rmb_log_error
rmb_log_fatal	rmb_log_fatal
rmb_log_info	rmb_log_info
rmb_log_success	rmb_log_success
rmb_log_trace	rmb_log_trace
rmb_log_warn	rmb_log_warn
selectPeaks	selectPeaks
selectPeaks,data.frame-method	selectPeaks
selectPeaks,msmsWorkspace-method	selectPeaks
selectPeaks,RmbSpectraSetList-method	selectPeaks
selectPeaks,RmbSpectrum2-method	selectPeaks
selectPeaks,RmbSpectrum2List-method	selectPeaks
selectSpectra	selectSpectra
selectSpectra,msmsWorkspace,character-method	selectSpectra
selectSpectra,RmbSpectraSetList,character-method	selectSpectra
setData	setData
setData,RmbSpectrum2,data.frame-method	setData
show,mbWorkspace-method	mbWorkspace-class
show,msmsWorkspace-method	msmsWorkspace-class
smiles2mass	smiles2mass
spectraCount	spectraCount
spectraCount,msmsWorkspace-method	spectraCount
spectraCount,RmbSpectraSet-method	spectraCount
spectraCount,RmbSpectraSetList-method	spectraCount
to.limits.rcdk	to.limits.rcdk
toMassbank	toMassbank
toRMB	toRMB
updateHeader	updateHeader
updateSettings	updateSettings
validate	validate
