Package: Rfastp
Type: Package
Title: An Ultra-Fast and All-in-One Fastq Preprocessor (Quality
        Control, Adapter, low quality and polyX trimming) and UMI
        Sequence Parsing).
Version: 1.0.0
Authors@R: c(
  person("Wei", "Wang",
    email="periwinkle.david@gmail.com", 
    role=c("aut"),
    comment = c(ORCID = "0000-0002-3216-7118")), 
  person("Ji-Dung", "Luo", 
    email="jluo@rockefeller.edu", 
    role=c("ctb"),
    comment = c(ORCID = "0000-0003-0150-1440")),
  person("Thomas", "Carroll", 
    email="tc.infomatics@gmail.com", 
    role = c("cre", "aut"),
    comment = c(ORCID = "0000-0002-0073-1714")))
Description: Rfastp is an R wrapper of fastp developed in c++.
    fastp performs quality control for fastq files. including low quality bases
    trimming, polyX trimming, adapter auto-detection and trimming, paired-end
    reads merging, UMI sequence/id handling. Rfastp can concatenate multiple
    files into one file (like shell command cat) and accept multiple files as
    input.  
License: GPL-3 + file LICENSE
Encoding: UTF-8
LazyData: true
RoxygenNote: 7.1.1
biocViews: QualityControl, Sequencing, Preprocessing, Software
SystemRequirements: GNU make
LinkingTo: Rcpp, Rhtslib, zlibbioc
Imports: Rcpp, rjson, ggplot2, reshape2
Suggests: BiocStyle, testthat, knitr, rmarkdown
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/Rfastp
git_branch: RELEASE_3_12
git_last_commit: e6fb642
git_last_commit_date: 2020-10-27
Date/Publication: 2020-10-27
NeedsCompilation: yes
Packaged: 2020-10-28 02:51:52 UTC; biocbuild
Author: Wei Wang [aut] (<https://orcid.org/0000-0002-3216-7118>),
  Ji-Dung Luo [ctb] (<https://orcid.org/0000-0003-0150-1440>),
  Thomas Carroll [cre, aut] (<https://orcid.org/0000-0002-0073-1714>)
Maintainer: Thomas Carroll <tc.infomatics@gmail.com>
Built: R 4.0.3; x86_64-conda-linux-gnu; 2021-03-27 17:11:55 UTC; unix
