Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.28.0
Date: 2020-03-31
Author: Anita Lerch, Charlotte Soneson, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: R (>= 4.0), parallel, GenomicRanges, Rbowtie
Imports: methods, grDevices, graphics, utils, BiocGenerics, S4Vectors,
        IRanges, BiocManager, Biobase, Biostrings, BSgenome, Rsamtools,
        GenomicFeatures, ShortRead, GenomicAlignments, BiocParallel,
        GenomeInfoDb, rtracklayer, GenomicFiles, Rhisat2, AnnotationDbi
Suggests: Gviz, BiocStyle, knitr, rmarkdown, covr, testthat
LinkingTo: Rhtslib
SystemRequirements: GNU make
Description: This package provides a framework for the quantification
    and analysis of Short Reads. It covers a complete workflow
    starting from raw sequence reads, over creation of alignments
    and quality control plots, to the quantification of genomic
    regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, Sequencing, ChIPSeq, RNASeq,
        MethylSeq, Coverage, Alignment, QualityControl, ImmunoOncology
Archs: x64
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/QuasR
git_branch: RELEASE_3_11
git_last_commit: 57094dd
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: yes
Packaged: 2020-04-28 00:52:37 UTC; biocbuild
Built: R 4.0.0; x86_64-conda_cos6-linux-gnu; 2020-05-11 11:23:47 UTC; unix
