Package: QuasR
Type: Package
Title: Quantify and Annotate Short Reads in R
Version: 1.18.0
Date: 2017-04-20
Author: Anita Lerch, Dimos Gaiditzis and Michael Stadler
Maintainer: Michael Stadler <michael.stadler@fmi.ch>
Depends: parallel, GenomicRanges (>= 1.13.3), Rbowtie
Imports: methods, grDevices, graphics, utils, zlibbioc, BiocGenerics,
        S4Vectors (>= 0.9.25), IRanges, BiocInstaller, Biobase,
        Biostrings, BSgenome, Rsamtools (>= 1.19.38), GenomicFeatures
        (>= 1.17.13), ShortRead (>= 1.19.1), GenomicAlignments,
        BiocParallel, GenomeInfoDb, rtracklayer, GenomicFiles
Suggests: Gviz, RUnit, BiocStyle
LinkingTo: Rsamtools
Description: This package provides a framework for the quantification
        and analysis of Short Reads. It covers a complete workflow
        starting from raw sequence reads, over creation of alignments
        and quality control plots, to the quantification of genomic
        regions of interest.
License: GPL-2
biocViews: Genetics, Preprocessing, Sequencing, ChIPSeq, RNASeq,
        MethylSeq, Coverage, Alignment, QualityControl
Archs: x64
NeedsCompilation: yes
Packaged: 2017-10-30 23:39:32 UTC; biocbuild
Built: R 3.4.1; x86_64-pc-linux-gnu; 2018-02-11 15:48:02 UTC; unix
