ptairMS-package	ptairMS-package
aggregate	aggregate
align	align
alignSamples	alignSamples
alignSamples,ptrSet-method	alignSamples
annotateVOC	annotation
annotateVOC,data.frame-method	annotation
annotateVOC,ExpressionSet-method	annotation
annotateVOC,numeric-method	annotation
calibration	calibration
calibration,ptrRaw-method	calibration
calibration,ptrSet-method	calibration
calibrationFun	calibrationFun
changeTimeLimits	changeTimeLimits
convert_to_mzML	convert_to_mzML
createPtrSet	createPtrSet
cumulative_fit_function	cumulative_fit_function
deadTimeCorr	deadTimeCorr
defineKnots	defineKnots
defineKnots,ptrRaw-method	defineKnots
defineKnots,ptrSet-method	defineKnots
detectPeak	detectPeak
detectPeak,ptrRaw-method	detectPeak
detectPeak,ptrSet-method	detectPeak
determinePeakShape	determinePeakShape
exportSampleMetada	exportSampleMetada
extractEIC	extractEIC
fit_averagePeak	fit_averagePeak
fit_averagePeak_function	fit_averagePeak_function
formula2mass	formula2mass
getDirectory	getDirectory
getFileNames	getFileNames
getFileNames,ptrRaw-method	getFileNames
getFileNames,ptrSet-method	getFileNames
getPeakList	getPeakList
getSampleMetadata	getSampleMetadata
importSampleMetadata	importSampleMetadata
impute	impute
imputeMat	imputeMat
initializeFit	initializeFit
LocalMaximaSG	LocalMaximaSG
makeSubGroup	makeSubGroup
OptimalWindowsSG	OptimalWindowsSG
PeakList	PeakList
PeakList,ptrRaw-method	PeakList
plot,ptrSet,ANY-method	plot
plot,ptrSet-method	plot
plot.ptrSet	plot
plotCalib	plotCalib
plotCalib,ptrRaw-method	plotCalib
plotCalib,ptrSet-method	plotCalib
plotFeatures	plotFeatures
plotFeatures,ptrSet-method	plotFeatures
plotPeakShape	plotPeakShape
plotRaw	plotRaw
plotRaw,ptrRaw-method	plotRaw
plotRaw,ptrSet-method	plotRaw
plotTIC	plotTIC
plotTIC,ptrRaw-method	plotTIC
plotTIC,ptrSet-method	plotTIC
ptairMS	ptairMS-package
ptrRaw-class	ptrRaw
ptrSet-class	ptrSet
readRaw	readRaw
resetSampleMetadata	resetSampleMetadata
rmPeakList	rmPeakList
RunShinnyApp	RunShinnyApp
setSampleMetadata	setSampleMetadata
show,ptrRaw-method	show-ptrRaw-method
show,ptrSet-method	show-ptrSet-method
snipBase	snipBase
timeLimits	timeLimits
timeLimits,ptrRaw-method	timeLimits
timeLimits,ptrSet-method	timeLimits
TransmissionCurve	TransmissionCurve
updatePtrSet	updatePtrSet
width	width
writeEset	writeEset
writeEset,ExpressionSet-method	writeEset
