adj.get.hops            Function to identify all children of a parent
adj.remove.cycles       Function to remove cycles that may be present
                        in a directed graph represented by an adjacency
                        matrix
data.discretize         Function to discretize data based on user
                        specified cutoffs
eval.network            Function computing the f1-score, comparing an
                        inferred topology with a given topology
expO.colon.ras          Gene expression, annotations, clinical data and
                        priors for the colon cancer tumors collected by
                        the expression project for oncology (expO).
jorissen.colon.ras      Gene expression, annotations, clinical data and
                        priors for the colon cancer tumors collected by
                        Jorissen and colleagues in 2009.
mcc                     Function to compute the Matthews Correlation
                        Coefficient (MCC) in a classification framework
net2pred                Function fitting a regression model for each
                        gene in the data
netinf                  Function performing network inference by
                        combining priors and genomic data
netinf.cv               Function performing network inference by
                        combining priors and genomic data
netinf.predict          Function to make prediction of a node values
                        given its parents using an inferred network
netinf2gml              Function to create an 'igraph' object and
                        export a network to a GML readable by Cytoscape
pred.score              Function computing performance of prediction;
                        methods include r2, nrmse and mcc
predictionet-package    Inference for predictive networks designed for
                        (but not limited to) genomic data
predictionet.press.statistic
                        Function computing the press statistic for all
                        target variables in topology
predictionet.stability.cv
                        Function inferring networks in cross-validation
