CHANGES IN VERSION 2.6.0
------------------------

NEW FEATURES

    o Automatically computing size factors where required
    o Added progress indication when compiling the report

BUG FIXES

    o Fixed after changes in threejs package
    o Edited dropdown menu to remove unused green badge
    o Menus start expanded on the side, again
    o theme_bw applied when needed, corrected previous behavior

OTHER NOTES

    o Updated citation infos
    o Slight difference in handling validate/need errors

CHANGES IN VERSION 2.2.0
------------------------

NEW FEATURES

    o Added Demo data, loadable via demo button

BUG FIXES

    o Plots work now without cutting out points when zooming in

OTHER NOTES

    o Saved reactive values are now exported to dedicate environments (instead of assigning to global)



CHANGES IN VERSION 1.99.0
-------------------------

OTHER NOTES

    o Reflecting the major feature added, will trigger a major version number bump. Welcome soon, 
    pcaExplorer 2.0.0!


CHANGES IN VERSION 1.1.5
-------------------------

NEW FEATURES

    o Automated report generation - template available + editor in the app tab for advance user
    customization
    o Support for state saving, in the global environment as well as with binary data
    o All plots generated can be now exported with the dedicated button 
    o Added confidence ellipse for PCA plot
    o Added 3d pca plot
    o Added functions to automatically retrieve the annotation in format ready to use for the app
    o Added profile explorer function, for plotting behaviour across all samples for subset of genes
    o Added distribution plots
    o Added pairwise correlation plot
    o Added table to enhance readability of the gene finder plot, also by annotating sample names

BUG FIXES

    o Minor typos fixed in the tabs
    o Added option row.names to read.delim for allowing row names when uploading the data

OTHER NOTES

    o Added extra info in the about section
    o Instructions and vignette rewritten to reflect new design of the app


CHANGES IN VERSION 1.1.3
-------------------------

BUG FIXES

	o Remove y axis limits to gene boxplots
	o Fixed: correct labels and colors assignements for genespca

CHANGES IN VERSION 1.0.0
-------------------------

OTHER NOTES

	o Released in Bioconductor 3.3

CHANGES IN VERSION 0.99.1
-------------------------

OTHER NOTES

    o Changed format of the NEWS file

CHANGES IN VERSION 0.99.0
-------------------------

OTHER NOTES

    o Ready for submission to Bioconductor

CHANGES IN VERSION  0.9.0
-------------------------

OTHER NOTES

    o Added TravisCI integration for both branches
    o Added appveyor integration - plus badges in the README.md
    o Code cleanup
    o Added screenshots for the vignette
    o Removed some lengthy tests

CHANGES IN VERSION  0.8.0
-------------------------

NEW FEATURES

    o Selection of identifier type available in pca2go

OTHER NOTES

    o MIT license
    o Added TravisCI integration
    o Added codecov integration
    o Enhanced documentation

BUG FIXES

    o Couple of layout fixes

CHANGES IN VERSION  0.7.0
-------------------------

NEW FEATURES

    o Vignette full draft done

CHANGES IN VERSION  0.6.4
-------------------------

OTHER NOTES

    o Updated NEWS file

CHANGES IN VERSION  0.6.3
-------------------------

NEW FEATURES

    o About and Instructions done by now
    o Added some missing details on the documentations

CHANGES IN VERSION  0.6.2
-------------------------

OTHER NOTES

    o Corrected wordings for (cor)relations of principal components with covariates
    o Added a couple of checks if correct objects are provided

CHANGES IN VERSION  0.6.1
-------------------------

NEW FEATURES

    o Added function to remove selected samples suspected to be deemed as outliers, in order to see the effect of clustering on the good ones

CHANGES IN VERSION  0.6.0
-------------------------

OTHER NOTES

    o Documentation completed
    o Examples fully working, cleaned up further a little more.

CHANGES IN VERSION  0.5.0
-------------------------

OTHER NOTES

    o Further steps in direction of R CMD check

CHANGES IN VERSION  0.4.0
-------------------------

NEW FEATURES

    o Added pca2go live functionality

CHANGES IN VERSION  0.3.0
-------------------------

NEW FEATURES

    o Added color palette to choose, and dependent on the samples and factors available/selected

CHANGES IN VERSION  0.2.0
-------------------------

NEW FEATURES

    o Multifactorial exploration completed and adaptable to each dataset

CHANGES IN VERSION  0.1.0
-------------------------

NEW FEATURES

    o Restyling and (re)packaging mostly completed
