Package: ORFik
Type: Package
Title: Open Reading Frames in Genomics
Version: 1.2.0
Encoding: UTF-8
Authors@R: c(
  person(given = "Kornel", family = "Labun", email = "kornellabun@gmail.com", role = c("aut", "cre", "cph")),
  person(given = "Haakon", family = "Tjeldnes", email = "hauken_heyken@hotmail.com", role = c("aut", "dtc")),
  person(given = "Katarzyna", family = "Chyzynska", email = "katchyz@gmail.com", role = c("ctb", "dtc")),
  person(given = "Evind", family = "Valen", email = "eivind.valen@gmail.com", role = c("ths", "fnd")) )
Description: Tools for manipulation of RiboSeq, RNASeq and CageSeq data. ORFik 
  is extremely fast through use of C, data.table and GenomicRanges. Package 
  allows to reassign starts of the transcripts with the use of CageSeq data,
  automatic shifting of RiboSeq reads, finding of Open Reading Frames for the 
  whole genomes and many more.
biocViews: Software, Sequencing, RiboSeq, RNASeq, FunctionalGenomics,
        Coverage, Alignment, DataImport
License: MIT + file LICENSE
LazyData: TRUE
BugReports: https://github.com/JokingHero/ORFik/issues
URL: https://github.com/JokingHero/ORFik
Depends: R (>= 3.5.0), IRanges (>= 2.13.28), GenomicRanges (>=
        1.31.23), GenomicAlignments (>= 1.15.13)
Imports: S4Vectors (>= 0.17.39), GenomeInfoDb (>= 1.15.5),
        GenomicFeatures (>= 1.31.10), rtracklayer (>= 1.39.9), Rcpp (>=
        0.12.16), data.table (>= 1.10.4-3), Biostrings (>= 2.47.12),
        stats, tools, Rsamtools (>= 1.31.3), BiocGenerics (>= 0.25.3)
RoxygenNote: 6.1.0
Suggests: testthat, rmarkdown, knitr, BiocStyle, BSgenome,
        BSgenome.Hsapiens.UCSC.hg19, ggplot2 (>= 2.2.1)
LinkingTo: Rcpp
VignetteBuilder: knitr
git_url: https://git.bioconductor.org/packages/ORFik
git_branch: RELEASE_3_8
git_last_commit: 0efb39a
git_last_commit_date: 2018-10-30
Date/Publication: 2018-10-30
NeedsCompilation: yes
Packaged: 2018-10-31 02:28:22 UTC; biocbuild
Author: Kornel Labun [aut, cre, cph],
  Haakon Tjeldnes [aut, dtc],
  Katarzyna Chyzynska [ctb, dtc],
  Evind Valen [ths, fnd]
Maintainer: Kornel Labun <kornellabun@gmail.com>
Built: R 3.5.1; x86_64-conda_cos6-linux-gnu; 2018-12-24 03:31:02 UTC; unix
