Package: NetPathMiner
Version: 1.38.0
Date: 2014 onwards
Title: NetPathMiner for Biological Network Construction, Path Mining
        and Visualization
Authors@R: c(
    person("Ahmed", "Mohamed", , "mohamed@kuicr.kyoto-u.ac.jp", role = c("aut", "cre"),
           comment = c(ORCID = "0000-0001-6507-5300")),
    person("Tim", "Hancock", , "timothy.hancock@kuicr.kyoto-u.ac.jp", role = c("aut")),
    person("Tim", "Hancock", , "timothy.hancock@kuicr.kyoto-u.ac.jp", role = c("aut"))
    )
Description: NetPathMiner is a general framework for network path
    mining using genome-scale networks. It constructs networks from
    KGML, SBML and BioPAX files, providing three network
    representations, metabolic, reaction and gene representations.
    NetPathMiner finds active paths and applies machine learning
    methods to summarize found paths for easy interpretation. It
    also provides static and interactive visualizations of networks
    and paths to aid manual investigation.
Depends: R (>= 3.0.2), igraph (>= 1.0)
Suggests: rBiopaxParser (>= 2.1), RCurl, graph, knitr, rmarkdown,
        BiocStyle
VignetteBuilder: knitr
License: GPL (>= 2)
URL: https://github.com/ahmohamed/NetPathMiner
NeedsCompilation: yes
SystemRequirements: libxml2, libSBML (>= 5.5)
Biarch: TRUE
biocViews: GraphAndNetwork, Pathways, Network, Clustering,
        Classification
RoxygenNote: 6.1.1
Encoding: UTF-8
git_url: https://git.bioconductor.org/packages/NetPathMiner
git_branch: RELEASE_3_18
git_last_commit: 3116490
git_last_commit_date: 2023-10-24
Date/Publication: 2023-10-24
Packaged: 2023-10-24 22:08:11 UTC; biocbuild
Author: Ahmed Mohamed [aut, cre] (<https://orcid.org/0000-0001-6507-5300>),
  Tim Hancock [aut],
  Tim Hancock [aut]
Maintainer: Ahmed Mohamed <mohamed@kuicr.kyoto-u.ac.jp>
Built: R 4.3.3; x86_64-conda-linux-gnu; 2024-06-04 22:11:22 UTC; unix
