Package: MultiAssayExperiment
Title: Software for the Integration of Multi-omics Experiments in
        Bioconductor
Version: 1.4.9
Authors@R: c(person("Marcel", "Ramos", email = "marcel.ramos@roswellpark.org",
    role = c("aut", "cre")),
    person("Levi", "Waldron", email = "lwaldron.research@gmail.com",
    role = "aut"),
    person("MultiAssay", "SIG", email = "biocmultiassay@googlegroups.com",
    role = "ctb"))
Description: Multi-assay 'omics experiments on a set of samples are increasingly
    commonplace in biomedical research. MultiAssayExperiment implements data structures
    and methods for representing, manipulating, and integrating multi-assay experiments
    via efficient construction, subsetting, and extraction operations.
    These methods are implemented matching Bioconductor user experience by
    straightforward extending concept and design of single-assay classes such as
    SummarizedExperiment or ExpressionSet.
Depends: R (>= 3.4.0)
Imports: methods, GenomicRanges (>= 1.25.93), BiocGenerics,
        SummarizedExperiment (>= 1.3.81), S4Vectors, IRanges, Biobase,
        reshape2, shinydashboard, shiny, stats, tidyr, utils
Suggests: BiocStyle, testthat, knitr, R.rsp, GenomicFiles, HDF5Array,
        RaggedExperiment, rmarkdown, UpSetR, survival, survminer
biocViews: Infrastructure, DataRepresentation
License: Artistic-2.0
LazyData: true
VignetteBuilder: knitr, R.rsp
URL:
        https://github.com/waldronlab/MultiAssayExperiment/wiki/MultiAssayExperiment-API
BugReports: https://github.com/waldronlab/MultiAssayExperiment/issues
Collate: 'API.R' 'ExperimentList-class.R'
        'MultiAssayExperiment-class.R' 'RangedRaggedAssay-class.R'
        'MultiAssayExperiment-subset-methods.R'
        'MultiAssayExperiment-methods.R'
        'MultiAssayExperiment-helpers.R' 'MultiAssayExperiment-pkg.R'
        'MultiAssayExperiment.R' 'assay-methods.R' 'clusterOn.R'
        'data.R' 'hasAssay.R' 'listToMap.R' 'mapToList.R'
        'prepMultiAssay.R' 'upsetSamples.R'
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-01-08 01:22:28 UTC; biocbuild
Author: Marcel Ramos [aut, cre],
  Levi Waldron [aut],
  MultiAssay SIG [ctb]
Maintainer: Marcel Ramos <marcel.ramos@roswellpark.org>
Built: R 3.4.1; ; 2018-02-16 10:46:07 UTC; unix
