Type: Package
Package: MSstatsTMTPTM
Title: Post Translational Modification (PTM) Significance Analysis in
        shotgun mass spectrometry-based proteomic experiments with
        tandem mass tag (TMT) labeling
Version: 1.1.2
Date: 2020-09-28
Description: Tools for Post Translational Modification (PTM) and protein 
              significance analysis in shotgun mass spectrometry-based proteomic
              experiments with tandem mass tag (TMT) labeling. The functions in
              this package should be used after PTM/protein summarization. They
              can be used to both plot the summarized results and model the 
              summarized datasets.
Authors@R: c(person("Devon", "Kohler", email = "kohler.d@northeastern.edu", role = c("aut", "cre")),
            person("Ting", "Huang", email = "thuang0703@gmail.com", role=c("aut")),
            person("Mateusz", "Staniak", email = "mtst@mstaniak.pl", role = c("aut")),
          	person("Meena", "Choi", email = "mnchoi67@gmail.com", role="aut"),
          	person("Tsung-Heng", "Tsai", email = "tsai.tsungheng@gmail.com", role = "aut"),
          	person("Olga", "Vitek", email = "o.vitek@northeastern.edu", role = "aut"))
License: Artistic-2.0
Depends: R (>= 4.0)
Imports: dplyr, gridExtra, stringr, reshape2, stats, utils, ggplot2,
        grDevices, graphics, MSstatsTMT, Rcpp
Suggests: BiocStyle, knitr, rmarkdown, testthat, MSstats, covr
LinkingTo: Rcpp
VignetteBuilder: knitr
biocViews: ImmunoOncology, MassSpectrometry, Proteomics, Software,
        DifferentialExpression, OneChannel, TwoChannel, Normalization,
        QualityControl
BugReports: https://github.com/Vitek-Lab/MSstatsTMTPTM/issues
Encoding: UTF-8
LazyData: TRUE
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.1.1
git_url: https://git.bioconductor.org/packages/MSstatsTMTPTM
git_branch: master
git_last_commit: d938f9b
git_last_commit_date: 2021-02-15
Date/Publication: 2021-03-19
NeedsCompilation: yes
Packaged: 2021-03-19 23:13:34 UTC; biocbuild
Author: Devon Kohler [aut, cre],
  Ting Huang [aut],
  Mateusz Staniak [aut],
  Meena Choi [aut],
  Tsung-Heng Tsai [aut],
  Olga Vitek [aut]
Maintainer: Devon Kohler <kohler.d@northeastern.edu>
Built: R 4.1.0; x86_64-conda-linux-gnu; 2021-05-31 16:48:30 UTC; unix
