%>%	pipe
add_mofa_factors_to_seurat	add_mofa_factors_to_seurat
calculate_contribution_scores	calculate_contribution_scores
calculate_variance_explained	calculate_variance_explained
calculate_variance_explained_per_sample	calculate_variance_explained_per_sample
cluster_samples	cluster_samples
compare_elbo	compare_elbo
compare_factors	compare_factors
correlate_factors_with_covariates	correlate_factors_with_covariates
covariates,MOFA-method	covariates_names
covariates_names	covariates_names
covariates_names,MOFA-method	covariates_names
covariates_names<-	covariates_names
covariates_names<-,MOFA,vector-method	covariates_names
create_mofa	create_mofa
create_mofa_from_df	create_mofa_from_df
create_mofa_from_matrix	create_mofa_from_matrix
create_mofa_from_MultiAssayExperiment	create_mofa_from_MultiAssayExperiment
create_mofa_from_Seurat	create_mofa_from_Seurat
create_mofa_from_SingleCellExperiment	create_mofa_from_SingleCellExperiment
factors_names	factors_names
factors_names,MOFA-method	factors_names
factors_names<-	factors_names
factors_names<-,MOFA,vector-method	factors_names
features_metadata	features_metadata
features_metadata,MOFA-method	features_metadata
features_metadata<-	features_metadata
features_metadata<-,MOFA,data.frame-method	features_metadata
features_names	features_names
features_names,MOFA-method	features_names
features_names<-	features_names
features_names<-,MOFA,list-method	features_names
get_covariates	get_covariates
get_data	get_data
get_default_data_options	get_default_data_options
get_default_mefisto_options	get_default_mefisto_options
get_default_model_options	get_default_model_options
get_default_stochastic_options	get_default_stochastic_options
get_default_training_options	get_default_training_options
get_dimensions	get_dimensions
get_elbo	get_elbo
get_expectations	get_expectations
get_factors	get_factors
get_group_kernel	get_group_kernel
get_imputed_data	get_imputed_data
get_interpolated_factors	get_interpolated_factors
get_lengthscales	get_lengthscales
get_scales	get_scales
get_variance_explained	get_variance_explained
get_weights	get_weights
groups_names	groups_names
groups_names,MOFA-method	groups_names
groups_names<-	groups_names
groups_names<-,MOFA,character-method	groups_names
impute	impute
interpolate_factors	interpolate_factors
load_model	load_model
make_example_data	make_example_data
MOFA	MOFA
MOFA-class	MOFA
plot_alignment	plot_alignment
plot_ascii_data	plot_ascii_data
plot_data_heatmap	plot_data_heatmap
plot_data_overview	plot_data_overview
plot_data_scatter	plot_data_scatter
plot_data_vs_cov	plot_data_vs_cov
plot_dimred	plot_dimred
plot_enrichment	plot_enrichment
plot_enrichment_detailed	plot_enrichment_detailed
plot_enrichment_heatmap	plot_enrichment_heatmap
plot_factor	plot_factor
plot_factors	plot_factors
plot_factors_vs_cov	plot_factors_vs_cov
plot_factor_cor	plot_factor_cor
plot_group_kernel	plot_group_kernel
plot_interpolation_vs_covariate	plot_interpolation_vs_covariate
plot_sharedness	plot_sharedness
plot_smoothness	plot_smoothness
plot_top_weights	plot_top_weights
plot_variance_explained	plot_variance_explained
plot_variance_explained_by_covariates	plot_variance_explained_by_covariates
plot_variance_explained_per_feature	plot_variance_explained_per_feature
plot_weights	plot_weights
plot_weights_heatmap	plot_weights_heatmap
plot_weights_scatter	plot_weights_scatter
predict	predict
prepare_mofa	prepare_mofa
run_enrichment	run_enrichment
run_mofa	run_mofa
run_tsne	run_tsne
run_umap	run_umap
samples_metadata	samples_metadata
samples_metadata,MOFA-method	samples_metadata
samples_metadata<-	samples_metadata
samples_metadata<-,MOFA,data.frame-method	samples_metadata
samples_names	samples_names
samples_names,MOFA-method	samples_names
samples_names<-	samples_names
samples_names<-,MOFA,list-method	samples_names
select_model	select_model
set_covariates	set_covariates
subset_factors	subset_factors
subset_features	subset_features
subset_groups	subset_groups
subset_samples	subset_samples
subset_views	subset_views
summarise_factors	summarise_factors
views_names	views_names
views_names,MOFA-method	views_names
views_names<-	views_names
views_names<-,MOFA,character-method	views_names
