# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Thu Sep 15 06:47:08 2022
# ------------------------------------------------

package:
  name: bioconductor-mina
  version: 1.2.0
source:
  md5: 4f942b670329a50b8953cef874030542
  url:
    - https://bioarchive.galaxyproject.org/mina_1.2.0.tar.gz
    - https://bioconductor.org/packages/3.14/bioc/src/contrib/mina_1.2.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-mina/bioconductor-mina_1.2.0_src_all.tar.gz
build:
  number: '2'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hc247a5b_2
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_10
    - gcc_impl_linux-64 10.4.0 h7ee1905_16
    - gcc_linux-64 10.4.0 h9215b83_10
    - gxx_impl_linux-64 10.4.0 h7ee1905_16
    - gxx_linux-64 10.4.0 h6e491c6_10
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 10.4.0 h74af60c_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libsanitizer 10.4.0 hde28e3b_16
    - libstdcxx-devel_linux-64 10.4.0 h74af60c_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.9.14 ha878542_0
    - cairo 1.16.0 ha61ee94_1013
    - curl 7.83.1 h2283fc2_0
    - expat 2.4.8 h27087fc_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.0 hc2a2eb6_1
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_0
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 12.1.0 hea43390_16
    - gettext 0.19.8.1 h73d1719_1008
    - gfortran_impl_linux-64 12.1.0 h1db8e46_16
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 12.1.0 hea43390_16
    - harfbuzz 5.1.0 hf9f4e7c_0
    - icu 70.1 h27087fc_0
    - jpeg 9e h166bdaf_2
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h08a2579_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcblas 3.9.0 5_h92ddd45_netlib
    - libcurl 7.83.1 h2283fc2_0
    - libdeflate 1.14 h166bdaf_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 12.1.0 h1ec3361_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgfortran-ng 12.1.0 h69a702a_16
    - libgfortran5 12.1.0 hdcd56e2_16
    - libglib 2.72.1 h2d90d5f_0
    - libgomp 12.1.0 h8d9b700_16
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 5_h92ddd45_netlib
    - libnghttp2 1.47.0 hff17c54_1
    - libopenblas 0.3.21 pthreads_h78a6416_3
    - libpng 1.6.37 h753d276_4
    - libsanitizer 12.1.0 ha89aaad_16
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-devel_linux-64 12.1.0 h1ec3361_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libtiff 4.4.0 h55922b4_4
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.4 h166bdaf_0
    - libxcb 1.13 h7f98852_1004
    - libxml2 2.9.14 h22db469_4
    - libzlib 1.2.12 h166bdaf_3
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.5 h166bdaf_2
    - pango 1.50.9 hc4f8a73_0
    - pcre 8.45 h9c3ff4c_0
    - pcre2 10.37 hc3806b6_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-acepack 1.4.1 r41h859d828_1006
    - r-apcluster 1.4.10 r41h7525677_0
    - r-backports 1.4.1 r41hcfec24a_0
    - r-base 4.1.3 ha8c3e7c_2
    - r-base64enc 0.1_3 r41hcfec24a_1004
    - r-bh 1.78.0_0 r41hc72bb7e_0
    - r-biganalytics 1.1.21 r41h9c3ff4c_0
    - r-biglm 0.9_2.1 r41h859d828_0
    - r-bigmemory 4.6.1 r41h7525677_0
    - r-bigmemory.sri 0.1.3 r41hc72bb7e_1004
    - r-brio 1.1.3 r41hcfec24a_0
    - r-callr 3.7.2 r41hc72bb7e_0
    - r-checkmate 2.1.0 r41h06615bd_0
    - r-cli 3.4.0 r41h7525677_0
    - r-cluster 2.1.3 r41h8da6f51_0
    - r-codetools 0.2_18 r41hc72bb7e_0
    - r-colorspace 2.0_3 r41h06615bd_0
    - r-crayon 1.5.1 r41hc72bb7e_0
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    - r-deldir 1.0_6 r41h8da6f51_0
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    - r-diffobj 0.3.5 r41hcfec24a_0
    - r-digest 0.6.29 r41h03ef668_0
    - r-ellipsis 0.3.2 r41hcfec24a_0
    - r-evaluate 0.16 r41hc72bb7e_0
    - r-expm 0.999_6 r41h52d45c5_0
    - r-fansi 1.0.3 r41h06615bd_0
    - r-farver 2.1.1 r41h7525677_0
    - r-fastmap 1.1.0 r41h03ef668_0
    - r-foreach 1.5.2 r41hc72bb7e_0
    - r-foreign 0.8_82 r41hcfec24a_0
    - r-formula 1.2_4 r41hc72bb7e_0
    - r-fs 1.5.2 r41h7525677_1
    - r-ggplot2 3.3.6 r41hc72bb7e_0
    - r-glue 1.6.2 r41h06615bd_0
    - r-gridextra 2.3 r41hc72bb7e_1003
    - r-gtable 0.3.1 r41hc72bb7e_0
    - r-highr 0.9 r41hc72bb7e_0
    - r-hmisc 4.7_1 r41h8da6f51_0
    - r-htmltable 2.4.1 r41hc72bb7e_0
    - r-htmltools 0.5.3 r41h7525677_0
    - r-htmlwidgets 1.5.4 r41hc72bb7e_0
    - r-interp 1.1_3 r41h7525677_0
    - r-isoband 0.2.5 r41h03ef668_0
    - r-iterators 1.0.14 r41hc72bb7e_0
    - r-jpeg 0.1_9 r41hcfec24a_0
    - r-jsonlite 1.8.0 r41h06615bd_0
    - r-knitr 1.40 r41hc72bb7e_0
    - r-labeling 0.4.2 r41hc72bb7e_1
    - r-lattice 0.20_45 r41hcfec24a_0
    - r-latticeextra 0.6_30 r41hc72bb7e_0
    - r-lifecycle 1.0.2 r41hc72bb7e_0
    - r-magrittr 2.0.3 r41h06615bd_0
    - r-mass 7.3_58.1 r41h06615bd_0
    - r-matrix 1.4_1 r41h0154571_0
    - r-mcl 1.0 r41hc72bb7e_1002
    - r-mgcv 1.8_40 r41h0154571_0
    - r-munsell 0.5.0 r41hc72bb7e_1004
    - r-nlme 3.1_159 r41h8da6f51_0
    - r-nnet 7.3_17 r41hcfec24a_0
    - r-paralleldist 0.2.6 r41h03ef668_0
    - r-pillar 1.8.1 r41hc72bb7e_0
    - r-pkgconfig 2.0.3 r41hc72bb7e_1
    - r-pkgload 1.3.0 r41hc72bb7e_0
    - r-plyr 1.8.7 r41h7525677_0
    - r-png 0.1_7 r41hcfec24a_1004
    - r-praise 1.0.0 r41hc72bb7e_1005
    - r-processx 3.7.0 r41h06615bd_0
    - r-ps 1.7.1 r41h06615bd_0
    - r-r6 2.5.1 r41hc72bb7e_0
    - r-rcolorbrewer 1.1_3 r41h785f33e_0
    - r-rcpp 1.0.9 r41h7525677_1
    - r-rcpparmadillo 0.11.2.3.1 r41h9f5de39_0
    - r-rcppeigen 0.3.3.9.2 r41h43535f1_0
    - r-rcppparallel 5.1.5 r41h7525677_0
    - r-rematch2 2.1.2 r41hc72bb7e_1
    - r-reshape2 1.4.4 r41h03ef668_1
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    - r-rpart 4.1.16 r41hcfec24a_0
    - r-rprojroot 2.0.3 r41hc72bb7e_0
    - r-rspectra 0.16_1 r41h9f5de39_0
    - r-rstudioapi 0.14 r41hc72bb7e_0
    - r-scales 1.2.1 r41hc72bb7e_0
    - r-stringi 1.7.8 r41h30a9eb7_0
    - r-stringr 1.4.1 r41hc72bb7e_0
    - r-survival 3.4_0 r41h06615bd_0
    - r-testthat 3.1.4 r41h7525677_0
    - r-tibble 3.1.8 r41h06615bd_0
    - r-utf8 1.2.2 r41hcfec24a_0
    - r-uuid 1.1_0 r41h06615bd_0
    - r-vctrs 0.4.1 r41h7525677_0
    - r-viridis 0.6.2 r41hc72bb7e_0
    - r-viridislite 0.4.1 r41hc72bb7e_0
    - r-waldo 0.4.0 r41hc72bb7e_0
    - r-withr 2.5.0 r41hc72bb7e_0
    - r-xfun 0.33 r41h7525677_0
    - r-yaml 2.3.5 r41h06615bd_0
    - readline 8.1.2 h0f457ee_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.2 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.12 h166bdaf_3
    - zstd 1.5.2 h6239696_4
  run:
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - libstdcxx-ng >=12
    - r-apcluster
    - r-base >=4.1,<4.2.0a0
    - r-biganalytics
    - r-bigmemory
    - r-foreach
    - r-ggplot2
    - r-hmisc
    - r-mcl
    - r-paralleldist
    - r-plyr
    - r-rcpp
    - r-rcpparmadillo
    - r-rcppparallel
    - r-reshape2
    - r-rspectra
    - r-stringr
test:
  commands:
    - $R -e "library('mina')"
about:
  description: An increasing number of microbiome datasets have been generated and
    analyzed with the help of rapidly developing sequencing technologies. At present,
    analysis of taxonomic profiling data is mainly conducted using composition-based
    methods, which ignores interactions between community members. Besides this, a
    lack of efficient ways to compare microbial interaction networks limited the study
    of community dynamics. To better understand how community diversity is affected
    by complex interactions between its members, we developed a framework (Microbial
    community dIversity and Network Analysis, mina), a comprehensive framework for
    microbial community diversity analysis and network comparison. By defining and
    integrating network-derived community features, we greatly reduce noise-to-signal
    ratio for diversity analyses. A bootstrap and permutation-based method was implemented
    to assess community network dissimilarities and extract discriminative features
    in a statistically principled way.
  home: https://bioconductor.org/packages/3.14/bioc/html/mina.html
  license: GPL
  license_file: /opt/conda/conda-bld/bioconductor-mina_1663228502405/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/R/share/licenses/GPL-3
  summary: Microbial community dIversity and Network Analysis
extra:
  copy_test_source_files: true
  final: true
