# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Sun Dec  3 14:45:48 2023
# ------------------------------------------------

package:
  name: bioconductor-mina
  version: 1.10.0
source:
  md5: d6578736bef864eef8f89958a849137b
  url:
    - https://bioarchive.galaxyproject.org/mina_1.10.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/Archive/mina/mina_1.10.0.tar.gz
    - https://bioconductor.org/packages/3.18/bioc/src/contrib/mina_1.10.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-mina/bioconductor-mina_1.10.0_src_all.tar.gz
build:
  number: '0'
  rpaths:
    - lib/
    - lib/R/lib/
  run_exports: bioconductor-mina >=1.10.0,<2.0a0
  string: r43hf17093f_0
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.40 hf600244_0
    - binutils_linux-64 2.40 hbdbef99_2
    - gcc_impl_linux-64 12.3.0 he2b93b0_3
    - gcc_linux-64 12.3.0 h76fc315_2
    - gxx_impl_linux-64 12.3.0 he2b93b0_3
    - gxx_linux-64 12.3.0 h8a814eb_2
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - ld_impl_linux-64 2.40 h41732ed_0
    - libgcc-devel_linux-64 12.3.0 h8bca6fd_103
    - libgcc-ng 13.2.0 h807b86a_3
    - libgomp 13.2.0 h807b86a_3
    - libsanitizer 12.3.0 h0f45ef3_3
    - libstdcxx-devel_linux-64 12.3.0 h8bca6fd_103
    - libstdcxx-ng 13.2.0 h7e041cc_3
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_16
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.40 hf600244_0
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 hd590300_5
    - c-ares 1.23.0 hd590300_0
    - ca-certificates 2023.11.17 hbcca054_0
    - cairo 1.18.0 h3faef2a_0
    - curl 8.4.0 hca28451_0
    - expat 2.5.0 hcb278e6_1
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 h77eed37_1
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 h267a509_2
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 13.2.0 h338b0a0_3
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 13.2.0 h76e1118_3
    - gmp 6.3.0 h59595ed_0
    - graphite2 1.3.13 h58526e2_1001
    - gxx_impl_linux-64 13.2.0 h338b0a0_3
    - harfbuzz 8.3.0 h3d44ed6_0
    - icu 73.2 h59595ed_0
    - kernel-headers_linux-64 2.6.32 he073ed8_16
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.21.2 h659d440_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcurl 8.4.0 hca28451_0
    - libdeflate 1.19 hd590300_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 13.2.0 ha9c7c90_103
    - libgcc-ng 13.2.0 h807b86a_3
    - libgfortran-ng 13.2.0 h69a702a_3
    - libgfortran5 13.2.0 ha4646dd_3
    - libglib 2.78.1 h783c2da_1
    - libgomp 13.2.0 h807b86a_3
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 3.0.0 hd590300_1
    - liblapack 3.9.0 5_h92ddd45_netlib
    - libnghttp2 1.58.0 h47da74e_0
    - libopenblas 0.3.25 pthreads_h413a1c8_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 13.2.0 h7e041cc_3
    - libssh2 1.11.0 h0841786_0
    - libstdcxx-devel_linux-64 13.2.0 ha9c7c90_103
    - libstdcxx-ng 13.2.0 h7e041cc_3
    - libtiff 4.6.0 ha9c0a0a_2
    - libuuid 2.38.1 h0b41bf4_0
    - libwebp-base 1.3.2 hd590300_0
    - libxcb 1.15 h0b41bf4_0
    - libzlib 1.2.13 hd590300_5
    - make 4.3 hd18ef5c_1
    - ncurses 6.4 h59595ed_2
    - openssl 3.2.0 hd590300_1
    - pandoc 3.1.3 h32600fe_0
    - pango 1.50.14 ha41ecd1_2
    - pcre2 10.42 hcad00b1_0
    - pixman 0.42.2 h59595ed_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-apcluster 1.4.11 r43ha503ecb_0
    - r-backports 1.4.1 r43h57805ef_2
    - r-base 4.3.2 hb8ee39d_1
    - r-base64enc 0.1_3 r43h57805ef_1006
    - r-bh 1.81.0_1 r43hc72bb7e_1
    - r-biganalytics 1.1.21 r43h59595ed_2
    - r-biglm 0.9_2.1 r43h61816a4_2
    - r-bigmemory 4.6.1 r43ha503ecb_2
    - r-bigmemory.sri 0.1.6 r43hc72bb7e_1
    - r-bslib 0.6.1 r43hc72bb7e_0
    - r-cachem 1.0.8 r43h57805ef_1
    - r-checkmate 2.3.0 r43h57805ef_0
    - r-cli 3.6.1 r43ha503ecb_1
    - r-cluster 2.1.6 r43h61816a4_0
    - r-codetools 0.2_19 r43hc72bb7e_1
    - r-colorspace 2.1_0 r43h57805ef_1
    - r-crayon 1.5.2 r43hc72bb7e_2
    - r-data.table 1.14.8 r43h029312a_2
    - r-dbi 1.1.3 r43hc72bb7e_2
    - r-deldir 2.0_2 r43h61816a4_0
    - r-digest 0.6.33 r43ha503ecb_0
    - r-ellipsis 0.3.2 r43h57805ef_2
    - r-evaluate 0.23 r43hc72bb7e_0
    - r-expm 0.999_8 r43hd9ac46e_0
    - r-fansi 1.0.5 r43h57805ef_0
    - r-farver 2.1.1 r43ha503ecb_2
    - r-fastmap 1.1.1 r43ha503ecb_1
    - r-fontawesome 0.5.2 r43hc72bb7e_0
    - r-foreach 1.5.2 r43hc72bb7e_2
    - r-foreign 0.8_86 r43h57805ef_0
    - r-formula 1.2_5 r43hc72bb7e_1
    - r-fs 1.6.3 r43ha503ecb_0
    - r-ggplot2 3.4.4 r43hc72bb7e_0
    - r-glue 1.6.2 r43h57805ef_2
    - r-gridextra 2.3 r43hc72bb7e_1005
    - r-gtable 0.3.4 r43hc72bb7e_0
    - r-highr 0.10 r43hc72bb7e_1
    - r-hmisc 5.1_1 r43h61816a4_0
    - r-htmltable 2.4.2 r43hc72bb7e_0
    - r-htmltools 0.5.7 r43ha503ecb_0
    - r-htmlwidgets 1.6.3 r43hc72bb7e_0
    - r-interp 1.1_5 r43hcf54a89_0
    - r-isoband 0.2.7 r43ha503ecb_2
    - r-iterators 1.0.14 r43hc72bb7e_2
    - r-jpeg 0.1_10 r43h66f22b2_5
    - r-jquerylib 0.1.4 r43hc72bb7e_2
    - r-jsonlite 1.8.7 r43h57805ef_0
    - r-knitr 1.45 r43hc72bb7e_0
    - r-labeling 0.4.3 r43hc72bb7e_0
    - r-lattice 0.22_5 r43h57805ef_0
    - r-latticeextra 0.6_30 r43hc72bb7e_2
    - r-lifecycle 1.0.4 r43hc72bb7e_0
    - r-magrittr 2.0.3 r43h57805ef_2
    - r-mass 7.3_60 r43h57805ef_1
    - r-matrix 1.6_4 r43h316c678_0
    - r-mcl 1.0 r43hc72bb7e_1004
    - r-memoise 2.0.1 r43hc72bb7e_2
    - r-mgcv 1.9_0 r43h316c678_0
    - r-mime 0.12 r43h57805ef_2
    - r-munsell 0.5.0 r43hc72bb7e_1006
    - r-nlme 3.1_164 r43h61816a4_0
    - r-nnet 7.3_19 r43h57805ef_1
    - r-paralleldist 0.2.6 r43ha503ecb_2
    - r-pillar 1.9.0 r43hc72bb7e_1
    - r-pkgconfig 2.0.3 r43hc72bb7e_3
    - r-plyr 1.8.9 r43ha503ecb_0
    - r-png 0.1_8 r43h81d01c5_1
    - r-r6 2.5.1 r43hc72bb7e_2
    - r-rappdirs 0.3.3 r43h57805ef_2
    - r-rcolorbrewer 1.1_3 r43h785f33e_2
    - r-rcpp 1.0.11 r43h7df8631_0
    - r-rcpparmadillo 0.12.6.4.0 r43h08d816e_0
    - r-rcppeigen 0.3.3.9.4 r43h08d816e_0
    - r-rcppparallel 5.1.6 r43ha503ecb_1
    - r-reshape2 1.4.4 r43ha503ecb_3
    - r-rlang 1.1.2 r43ha503ecb_0
    - r-rmarkdown 2.25 r43hc72bb7e_0
    - r-rpart 4.1.21 r43h57805ef_0
    - r-rspectra 0.16_1 r43h08d816e_2
    - r-rstudioapi 0.15.0 r43hc72bb7e_0
    - r-sass 0.4.7 r43ha503ecb_0
    - r-scales 1.3.0 r43hc72bb7e_0
    - r-stringi 1.8.2 r43h9facbd6_0
    - r-stringr 1.5.1 r43h785f33e_0
    - r-survival 3.5_7 r43h57805ef_0
    - r-tibble 3.2.1 r43h57805ef_2
    - r-tinytex 0.49 r43hc72bb7e_0
    - r-utf8 1.2.4 r43h57805ef_0
    - r-uuid 1.1_1 r43h57805ef_0
    - r-vctrs 0.6.5 r43ha503ecb_0
    - r-viridis 0.6.4 r43hc72bb7e_0
    - r-viridislite 0.4.2 r43hc72bb7e_1
    - r-withr 2.5.2 r43hc72bb7e_0
    - r-xfun 0.41 r43ha503ecb_0
    - r-yaml 2.3.7 r43h57805ef_1
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_16
    - tk 8.6.13 noxft_h4845f30_101
    - tktable 2.10 h0c5db8f_5
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.1.1 hd590300_0
    - xorg-libsm 1.2.4 h7391055_0
    - xorg-libx11 1.8.7 h8ee46fc_0
    - xorg-libxau 1.0.11 hd590300_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.11 hd590300_0
    - xorg-libxt 1.3.0 hd590300_1
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.13 hd590300_5
    - zstd 1.5.5 hfc55251_0
  run:
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - libstdcxx-ng >=12
    - r-apcluster
    - r-base >=4.3,<4.4.0a0
    - r-biganalytics
    - r-bigmemory
    - r-foreach
    - r-ggplot2
    - r-hmisc
    - r-mcl
    - r-paralleldist
    - r-plyr
    - r-rcpp
    - r-rcpparmadillo
    - r-rcppparallel
    - r-reshape2
    - r-rspectra
    - r-stringr
test:
  commands:
    - $R -e "library('mina')"
about:
  description: An increasing number of microbiome datasets have been generated and
    analyzed with the help of rapidly developing sequencing technologies. At present,
    analysis of taxonomic profiling data is mainly conducted using composition-based
    methods, which ignores interactions between community members. Besides this, a
    lack of efficient ways to compare microbial interaction networks limited the study
    of community dynamics. To better understand how community diversity is affected
    by complex interactions between its members, we developed a framework (Microbial
    community dIversity and Network Analysis, mina), a comprehensive framework for
    microbial community diversity analysis and network comparison. By defining and
    integrating network-derived community features, we greatly reduce noise-to-signal
    ratio for diversity analyses. A bootstrap and permutation-based method was implemented
    to assess community network dissimilarities and extract discriminative features
    in a statistically principled way.
  home: https://bioconductor.org/packages/3.18/bioc/html/mina.html
  license: GPL
  license_file: /opt/conda/conda-bld/bioconductor-mina_1701616709055/_h_env_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_placehold_place/lib/R/share/licenses/GPL-3
  summary: Microbial community dIversity and Network Analysis
extra:
  copy_test_source_files: true
  final: true
