{% set version = "1.18.0" %}
{% set name = "methylPipe" %}
{% set bioc = "3.9" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: e671d3ee89cf1a770cf8ac13b919c284
build:
  number: 1
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: BSgenome.Hsapiens.UCSC.hg18, TxDb.Hsapiens.UCSC.hg18.knownGene, knitr, MethylSeekR
requirements:
  host:
    - 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
    - 'bioconductor-biostrings >=2.52.0,<2.53.0'
    - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0'
    - 'bioconductor-genomicalignments >=1.20.0,<1.21.0'
    - 'bioconductor-genomicranges >=1.36.0,<1.37.0'
    - 'bioconductor-gviz >=1.28.0,<1.29.0'
    - 'bioconductor-iranges >=2.18.0,<2.19.0'
    - 'bioconductor-marray >=1.62.0,<1.63.0'
    - 'bioconductor-rsamtools >=2.0.0,<2.1.0'
    - 'bioconductor-s4vectors >=0.22.0,<0.23.0'
    - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0'
    - r-base
    - r-data.table
    - r-gplots
  run:
    - 'bioconductor-biocgenerics >=0.30.0,<0.31.0'
    - 'bioconductor-biostrings >=2.52.0,<2.53.0'
    - 'bioconductor-genomeinfodb >=1.20.0,<1.21.0'
    - 'bioconductor-genomicalignments >=1.20.0,<1.21.0'
    - 'bioconductor-genomicranges >=1.36.0,<1.37.0'
    - 'bioconductor-gviz >=1.28.0,<1.29.0'
    - 'bioconductor-iranges >=2.18.0,<2.19.0'
    - 'bioconductor-marray >=1.62.0,<1.63.0'
    - 'bioconductor-rsamtools >=2.0.0,<2.1.0'
    - 'bioconductor-s4vectors >=0.22.0,<0.23.0'
    - 'bioconductor-summarizedexperiment >=1.14.0,<1.15.0'
    - r-base
    - r-data.table
    - r-gplots
  build:
    - {{ compiler('c') }}
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: GPL(>=2)
  summary: 'Memory efficient analysis of base resolution DNA methylation data in both the CpG and non-CpG sequence context. Integration of DNA methylation data derived from any methodology providing base- or low-resolution data.'
extra:
  identifiers:
    - biotools:methylpipe
  parent_recipe:
    name: bioconductor-methylpipe
    path: recipes/bioconductor-methylpipe
    version: 1.14.0

