Package: maigesPack
Version: 1.62.0
Title: Functions to handle cDNA microarray data, including several
        methods of data analysis
Author: Gustavo H. Esteves <gesteves@gmail.com>, with contributions
        from Roberto Hirata Jr <hirata@ime.usp.br>, E. Jordao Neves
        <neves@ime.usp.br>, Elier B. Cristo <elier@ime.usp.br>, Ana C.
        Simoes <anakqui@ime.usp.br> and Lucas Fahham
        <fahham@linux.ime.usp.br>
Maintainer: Gustavo H. Esteves <gesteves@gmail.com>
Depends: R (>= 2.10), convert, graph, limma, marray, methods
Suggests: amap, annotate, class, e1071, MASS, multtest, OLIN, R2HTML,
        rgl, som
Description: This package uses functions of various other packages
        together with other functions in a coordinated way to handle
        and analyse cDNA microarray data
License: GPL (>= 2)
LazyLoad: yes
Collate: AllClasses.R AllGenerics.R print-methods.R summary-methods.R
        show-methods.R dim-methods.R indexing-methods.R
        coerce-methods.R plot-methods.R image-methods.R
        boxplot-methods.R calcA-methods.R calcW-methods.R
        getLabels-methods.R activeMod.R activeModScoreHTML.R
        activeNet.R activeNetScoreHTML.R addGeneGrps.R addPaths.R
        bootstrapCor.R bootstrapMI.R bootstrapT.R classifyKNN.R
        classifyKNNsc.R classifyLDA.R classifyLDAsc.R classifySVM.R
        classifySVMsc.R colors.R compCorr.R contrastsFitM.R
        createMaigesRaw.R createTDMS.R deGenes2by2BootT.R
        deGenes2by2Ttest.R deGenes2by2Wilcox.R deGenesANOVA.R
        designANOVA.R heatmapsM.R hierMde.R hierM.R kmeansMde.R
        kmeansM.R loadData.R MI.R normLoc.R normOLIN.R normRepLoess.R
        normScaleLimma.R normScaleMarray.R plotGenePair.R relNet2TGF.R
        relNetworkB.R relNetworkM.R robustCorr.R selSpots.R somMde.R
        somM.R summarizeReplicates.R tableClass.R tablesDE.R
URL: http://www.maiges.org/en/software/
biocViews: Microarray, TwoChannel, Preprocessing, ThirdPartyClient,
        DifferentialExpression, Clustering, Classification,
        GraphAndNetwork
git_url: https://git.bioconductor.org/packages/maigesPack
git_branch: RELEASE_3_16
git_last_commit: d97a6b1
git_last_commit_date: 2022-11-01
Date/Publication: 2022-11-01
NeedsCompilation: yes
Packaged: 2022-11-01 21:55:04 UTC; biocbuild
Built: R 4.2.3; x86_64-conda-linux-gnu; 2023-05-18 23:55:32 UTC; unix
