Package: MADSEQ
Type: Package
Title: Mosaic Aneuploidy Detection and Quantification using Massive
        Parallel Sequencing Data
Version: 1.6.1
Date: 2017-04-29
Author: Yu Kong, Adam Auton, John Murray Greally
Maintainer: Yu Kong <yu.kong@phd.einstein.yu.edu>
Description: The MADSEQ package provides a group of hierarchical
        Bayeisan models for the detection of mosaic aneuploidy, the
        inference of the type of aneuploidy and also for the
        quantification of the fraction of aneuploid cells in the
        sample.
License: GPL(>=2)
Depends: R(>= 3.4), rjags(>= 4-6),
Suggests: knitr
VignetteBuilder: knitr
LazyData: True
Imports: VGAM, coda, BSgenome, BSgenome.Hsapiens.UCSC.hg19, S4Vectors,
        methods, preprocessCore, GenomicAlignments, Rsamtools,
        Biostrings, GenomicRanges, IRanges, VariantAnnotation,
        SummarizedExperiment, GenomeInfoDb, rtracklayer, graphics,
        stats, grDevices, utils, zlibbioc, vcfR
biocViews: GenomicVariation, SomaticMutation, VariantDetection,
        Bayesian, CopyNumberVariation, Sequencing, Coverage
URL: https://github.com/ykong2/MADSEQ
BugReports: https://github.com/ykong2/MADSEQ/issues
RoxygenNote: 6.0.1
NeedsCompilation: no
Packaged: 2018-05-04 03:55:19 UTC; biocbuild
Built: R 3.4.1; ; 2018-10-23 13:46:08 UTC; unix
