Package: M3D
Type: Package
Title: Identifies differentially methylated regions across testing
        groups
Version: 1.22.0
Date: 2016-06-22
Author: Tom Mayo
Maintainer: Tom Mayo <t.mayo@ed.ac.uk>
Description: This package identifies statistically significantly differentially
    methylated regions of CpGs. It uses kernel methods (the Maximum Mean
    Discrepancy) to measure differences in methylation profiles, and relates
    these to inter-replicate changes, whilst accounting for variation in
    coverage profiles.
License: Artistic License 2.0
Imports: parallel, Rcpp, BiocGenerics, S4Vectors, IRanges,
        GenomicRanges, SummarizedExperiment, BiSeq
LinkingTo: Rcpp
Depends: R (>= 3.3.0)
VignetteBuilder: knitr
Suggests: BiocStyle, knitr, testthat
biocViews: DNAMethylation, DifferentialMethylation, Coverage, CpGIsland
RoxygenNote: 5.0.1
PackageStatus: Deprecated
git_url: https://git.bioconductor.org/packages/M3D
git_branch: RELEASE_3_11
git_last_commit: 09ed714
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: yes
Packaged: 2020-04-28 01:22:11 UTC; biocbuild
Built: R 4.0.0; x86_64-conda_cos6-linux-gnu; 2020-05-11 15:27:29 UTC; unix
