# This file created by conda-build 3.21.8
# meta.yaml template originally from:
# /opt/recipe, last modified Fri Sep 16 21:43:57 2022
# ------------------------------------------------

package:
  name: bioconductor-linnorm
  version: 2.18.0
source:
  md5: 1f384b44717315992f6701390acf901b
  url:
    - https://bioarchive.galaxyproject.org/Linnorm_2.18.0.tar.gz
    - https://bioconductor.org/packages/3.14/bioc/src/contrib/Linnorm_2.18.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-linnorm/bioconductor-linnorm_2.18.0_src_all.tar.gz
build:
  number: '2'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r41hc247a5b_2
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - binutils_linux-64 2.36 hf3e587d_10
    - gcc_impl_linux-64 10.4.0 h7ee1905_16
    - gcc_linux-64 10.4.0 h9215b83_10
    - gxx_impl_linux-64 10.4.0 h7ee1905_16
    - gxx_linux-64 10.4.0 h6e491c6_10
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - libgcc-devel_linux-64 10.4.0 h74af60c_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgomp 12.1.0 h8d9b700_16
    - libsanitizer 10.4.0 hde28e3b_16
    - libstdcxx-devel_linux-64 10.4.0 h74af60c_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - binutils_impl_linux-64 2.36.1 h193b22a_2
    - bioconductor-limma 3.50.3 r41hc0cfd56_0
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.18.1 h7f98852_0
    - ca-certificates 2022.9.14 ha878542_0
    - cairo 1.16.0 ha61ee94_1013
    - curl 7.83.1 h2283fc2_0
    - expat 2.4.8 h27087fc_0
    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.0 hc2a2eb6_1
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_0
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 12.1.0 hea43390_16
    - gettext 0.19.8.1 h73d1719_1008
    - gfortran_impl_linux-64 12.1.0 h1db8e46_16
    - glpk 5.0 h445213a_0
    - gmp 6.2.1 h58526e2_0
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 12.1.0 hea43390_16
    - harfbuzz 5.1.0 hf9f4e7c_0
    - icu 70.1 h27087fc_0
    - jpeg 9e h166bdaf_2
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.19.3 h08a2579_0
    - ld_impl_linux-64 2.36.1 hea4e1c9_2
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcblas 3.9.0 5_h92ddd45_netlib
    - libcurl 7.83.1 h2283fc2_0
    - libdeflate 1.14 h166bdaf_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 12.1.0 h1ec3361_16
    - libgcc-ng 12.1.0 h8d9b700_16
    - libgfortran-ng 12.1.0 h69a702a_16
    - libgfortran5 12.1.0 hdcd56e2_16
    - libglib 2.72.1 h2d90d5f_0
    - libgomp 12.1.0 h8d9b700_16
    - libiconv 1.16 h516909a_0
    - liblapack 3.9.0 5_h92ddd45_netlib
    - libnghttp2 1.47.0 hff17c54_1
    - libpng 1.6.38 h753d276_0
    - libsanitizer 12.1.0 ha89aaad_16
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-devel_linux-64 12.1.0 h1ec3361_16
    - libstdcxx-ng 12.1.0 ha89aaad_16
    - libtiff 4.4.0 h55922b4_4
    - libuuid 2.32.1 h7f98852_1000
    - libwebp-base 1.2.4 h166bdaf_0
    - libxcb 1.13 h7f98852_1004
    - libxml2 2.9.14 h22db469_4
    - libzlib 1.2.12 h166bdaf_3
    - make 4.3 hd18ef5c_1
    - ncurses 6.3 h27087fc_1
    - openssl 3.0.5 h166bdaf_2
    - pango 1.50.9 hc4f8a73_0
    - pcre 8.45 h9c3ff4c_0
    - pcre2 10.37 hc3806b6_1
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - r-amap 0.8_18 r41h5ee154c_2
    - r-apcluster 1.4.10 r41h7525677_0
    - r-backports 1.4.1 r41hcfec24a_0
    - r-base 4.1.3 ha8c3e7c_2
    - r-brio 1.1.3 r41hcfec24a_0
    - r-callr 3.7.2 r41hc72bb7e_0
    - r-class 7.3_20 r41hcfec24a_0
    - r-cli 3.4.0 r41h7525677_0
    - r-cluster 2.1.3 r41h8da6f51_0
    - r-colorspace 2.0_3 r41h06615bd_0
    - r-crayon 1.5.1 r41hc72bb7e_0
    - r-deoptimr 1.0_11 r41hc72bb7e_0
    - r-desc 1.4.2 r41hc72bb7e_0
    - r-diffobj 0.3.5 r41hcfec24a_0
    - r-digest 0.6.29 r41h03ef668_0
    - r-diptest 0.76_0 r41h06615bd_0
    - r-ellipse 0.4.3 r41hc72bb7e_0
    - r-ellipsis 0.3.2 r41hcfec24a_0
    - r-evaluate 0.16 r41hc72bb7e_0
    - r-fansi 1.0.3 r41h06615bd_0
    - r-farver 2.1.1 r41h7525677_0
    - r-fastcluster 1.2.3 r41h9c3ff4c_0
    - r-flexmix 2.3_18 r41hc72bb7e_0
    - r-fpc 2.2_9 r41hc72bb7e_0
    - r-fs 1.5.2 r41h7525677_1
    - r-gdata 2.18.0.1 r41hc72bb7e_0
    - r-ggdendro 0.1.23 r41hc72bb7e_0
    - r-ggplot2 3.3.6 r41hc72bb7e_0
    - r-glue 1.6.2 r41h06615bd_0
    - r-gmodels 2.18.1.1 r41ha770c72_0
    - r-gtable 0.3.1 r41hc72bb7e_0
    - r-gtools 3.9.3 r41h06615bd_0
    - r-igraph 1.3.4 r41hb34fc8a_0
    - r-isoband 0.2.5 r41h03ef668_0
    - r-jsonlite 1.8.0 r41h06615bd_0
    - r-kernlab 0.9_30 r41h43535f1_0
    - r-labeling 0.4.2 r41hc72bb7e_1
    - r-lattice 0.20_45 r41hcfec24a_0
    - r-lifecycle 1.0.2 r41hc72bb7e_0
    - r-magrittr 2.0.3 r41h06615bd_0
    - r-mass 7.3_58.1 r41h06615bd_0
    - r-matrix 1.4_1 r41h0154571_0
    - r-mclust 5.4.10 r41he5c027b_0
    - r-mgcv 1.8_40 r41h0154571_0
    - r-modeltools 0.2_23 r41hc72bb7e_1
    - r-munsell 0.5.0 r41hc72bb7e_1004
    - r-nlme 3.1_159 r41h8da6f51_0
    - r-nnet 7.3_17 r41hcfec24a_0
    - r-permute 0.9_7 r41hc72bb7e_0
    - r-pillar 1.8.1 r41hc72bb7e_0
    - r-pkgconfig 2.0.3 r41hc72bb7e_1
    - r-pkgload 1.3.0 r41hc72bb7e_0
    - r-prabclus 2.3_2 r41hc72bb7e_1
    - r-praise 1.0.0 r41hc72bb7e_1005
    - r-processx 3.7.0 r41h06615bd_0
    - r-ps 1.7.1 r41h06615bd_0
    - r-r6 2.5.1 r41hc72bb7e_0
    - r-rcolorbrewer 1.1_3 r41h785f33e_0
    - r-rcpp 1.0.9 r41h7525677_1
    - r-rcpparmadillo 0.11.2.3.1 r41h9f5de39_0
    - r-rematch2 2.1.2 r41hc72bb7e_1
    - r-rlang 1.0.5 r41h7525677_0
    - r-robustbase 0.95_0 r41he5c027b_0
    - r-rprojroot 2.0.3 r41hc72bb7e_0
    - r-rtsne 0.16 r41h37cf8d7_0
    - r-scales 1.2.1 r41hc72bb7e_0
    - r-statmod 1.4.37 r41hc3ea6d6_0
    - r-testthat 3.1.4 r41h7525677_0
    - r-tibble 3.1.8 r41h06615bd_0
    - r-utf8 1.2.2 r41hcfec24a_0
    - r-vctrs 0.4.1 r41h7525677_0
    - r-vegan 2.6_2 r41he5c027b_0
    - r-viridislite 0.4.1 r41hc72bb7e_0
    - r-waldo 0.4.0 r41hc72bb7e_0
    - r-withr 2.5.0 r41hc72bb7e_0
    - r-zoo 1.8_10 r41h06615bd_0
    - readline 8.1.2 h0f457ee_0
    - sed 4.8 he412f7d_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.7.2 h7f98852_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h7f98852_1
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h7f98852_1002
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - zlib 1.2.12 h166bdaf_3
    - zstd 1.5.2 h6239696_4
  run:
    - bioconductor-limma >=3.50.0,<3.51.0
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - libstdcxx-ng >=12
    - r-amap
    - r-apcluster
    - r-base >=4.1,<4.2.0a0
    - r-ellipse
    - r-fastcluster
    - r-fpc
    - r-ggdendro
    - r-ggplot2
    - r-gmodels
    - r-igraph
    - r-mass
    - r-mclust
    - r-rcpp >=0.12.2
    - r-rcpparmadillo >=0.8.100.1.0
    - r-rtsne
    - r-statmod
    - r-vegan
    - r-zoo
test:
  commands:
    - $R -e "library('Linnorm')"
about:
  description: Linnorm is an algorithm for normalizing and transforming RNA-seq, single
    cell RNA-seq, ChIP-seq count data or any large scale count data. It has been independently
    reviewed by Tian et al. on Nature Methods (https://doi.org/10.1038/s41592-019-0425-8).
    Linnorm can work with raw count, CPM, RPKM, FPKM and TPM.
  home: https://bioconductor.org/packages/3.14/bioc/html/Linnorm.html
  license: MIT + file LICENSE
  license_file: LICENSE
  summary: Linear model and normality based normalization and transformation method
    (Linnorm)
extra:
  copy_test_source_files: true
  final: true
