LEA-package	Replop-package
$,pcaProject-method	main_pca
adjusted.pvalues,lfmmProject-method	main_LFMM
ancestrymap	ancestrymap
ancestrymap2geno	ancestrymap2geno
ancestrymap2lfmm	ancestrymap2lfmm
barchart	barchart
barchart,snmfProject-method	main_sNMF
combine.lfmmProject	main_LFMM
combine.lfmmProject,character,character-method	main_LFMM
combine.snmfProject	main_sNMF
combine.snmfProject,character,character-method	main_sNMF
create.dataset	main_createDataSet
cross.entropy	crossEntropy
cross.entropy,snmfProject-method	main_sNMF
cross.entropy.estimation	main_crossEntropyEstimation
eigenvalues	main_pca
eigenvalues,pcaProject-method	main_pca
eigenvectors	main_pca
eigenvectors,pcaProject-method	main_pca
env	env
example_ancestrymap	ancestrymap
example_geno	geno
example_lfmm	lfmm_data
example_ped	ped
example_vcf	vcf
export.lfmmProject	main_LFMM
export.lfmmProject,character-method	main_LFMM
export.pcaProject	main_pca
export.pcaProject,character-method	main_pca
export.snmfProject	main_sNMF
export.snmfProject,character-method	main_sNMF
G	G
G,snmfProject-method	main_sNMF
genetic.gap	genetic_gap
genetic.offset	genetic_offset
geno	geno
geno2lfmm	geno2lfmm
import.lfmmProject	main_LFMM
import.lfmmProject,character-method	main_LFMM
import.pcaProject	main_pca
import.pcaProject,character-method	main_pca
import.snmfProject	main_sNMF
import.snmfProject,character-method	main_sNMF
impute	impute
impute,snmfProject-method	main_sNMF
lfmm	main_LFMM
lfmm.data	lfmm_data
lfmm.pvalues	lfmm_pvalues
lfmm.pvalues,lfmmProject-method	main_LFMM
lfmm2	lfmm2
lfmm2.test	lfmm2_test
lfmm2.test,lfmm2Class-method	lfmm2
lfmm2geno	lfmm2geno
lfmmClass-method	zscores
load.lfmmProject	main_LFMM
load.lfmmProject,character-method	main_LFMM
load.pcaProject	main_pca
load.pcaProject,character-method	main_pca
load.snmfProject	main_sNMF
load.snmfProject,character-method	main_sNMF
mlog10p.values,lfmmProject-method	main_LFMM
offset_example	offset_example
p.values,lfmmProject-method	main_LFMM
pca	main_pca
ped	ped
ped2geno	ped2geno
ped2lfmm	ped2lfmm
plot,lfmmProject-method	main_LFMM
plot,pcaProject-method	main_pca
plot,snmfProject-method	main_sNMF
projections	main_pca
projections,pcaProject-method	main_pca
Q	Q
Q,snmfProject-method	main_sNMF
read.env	readEnv
read.geno	readGeno
read.lfmm	readLfmm
read.zscore	readZscore
remove.lfmmProject	main_LFMM
remove.lfmmProject,character-method	main_LFMM
remove.pcaProject	main_pca
remove.pcaProject,character-method	main_pca
remove.snmfProject	main_sNMF
remove.snmfProject,character-method	main_sNMF
sdev	main_pca
sdev,pcaProject-method	main_pca
show,lfmmClass-method	main_LFMM
show,lfmmProject-method	main_LFMM
show,pcaProject-method	main_pca
show,snmfClass-method	main_sNMF
show,snmfProject-method	main_sNMF
snmf	main_sNMF
snmf.pvalues	snmf_pvalues
snmf.pvalues,snmfProject-method	main_sNMF
struct2geno	struct2geno
summary,lfmmProject-method	main_LFMM
summary,pcaProject-method	main_pca
summary,snmfProject-method	main_sNMF
tracy.widom	main_tracyWidom
tracy.widom,pcaProject-method	main_pca
tutorial	tutorial
vcf	vcf
vcf2geno	vcf2geno
vcf2lfmm	vcf2lfmm
write.env	writeEnv
write.geno	writeGeno
write.lfmm	writeLFMM
z.scores	zscores
z.scores,lfmmProject-method	main_LFMM
zscore.format	zscore
