Package: JunctionSeq
Version: 1.8.0
Title: JunctionSeq: A Utility for Detection of Differential Exon and
        Splice-Junction Usage in RNA-Seq data
Authors@R: c(person("Stephen", "Hartley", role = c("aut", "cre"),
           email = "JunctionSeq-contact@list.nih.gov", comment = "PhD"),
           person("Simon","Anders", role=c("cph"),email="sanders@fs.tum.de"),
           person("Alejandro","Reyes", role=c("cph"),email="alejandro.reyes@embl.de"))
Depends: R (>= 3.2.2), methods, SummarizedExperiment (>= 0.2.0), Rcpp
        (>= 0.11.0), RcppArmadillo (>= 0.3.4.4)
Imports: DESeq2 (>= 1.10.0), statmod, Hmisc, plotrix, stringr, Biobase
        (>= 2.30.0), locfit, BiocGenerics (>= 0.7.5), BiocParallel,
        genefilter, geneplotter, S4Vectors, IRanges, GenomicRanges,
Suggests: MASS, knitr, JctSeqData, BiocStyle
Enhances: Cairo, pryr
Description: A Utility for Detection and Visualization of Differential Exon or Splice-Junction Usage in RNA-Seq data.
License: file LICENSE
VignetteBuilder: knitr
LinkingTo: Rcpp, RcppArmadillo
NeedsCompilation: yes
biocViews: Sequencing, RNASeq, DifferentialExpression
URL: http://hartleys.github.io/JunctionSeq/index.html
BugReports: https://github.com/hartleys/JunctionSeq/issues
Author: Stephen Hartley [aut, cre] (PhD),
  Simon Anders [cph],
  Alejandro Reyes [cph]
Maintainer: Stephen Hartley <JunctionSeq-contact@list.nih.gov>
Packaged: 2017-10-31 00:39:03 UTC; biocbuild
Built: R 3.4.1; x86_64-pc-linux-gnu; 2018-03-03 06:40:24 UTC; unix
