Package: InteractionSet
Version: 1.8.0
Date: 2018-02-24
Title: Base Classes for Storing Genomic Interaction Data
Author: Aaron Lun <alun@wehi.edu.au>, Malcolm Perry <mgperry32@gmail.com>,
        Liz Ing-Simmons <liz.ing-simmons12@csc.mrc.ac.uk>
Maintainer: Aaron Lun <alun@wehi.edu.au>
Depends: R (>= 3.5), GenomicRanges, SummarizedExperiment
Imports: IRanges, S4Vectors (>= 0.17.21), GenomeInfoDb, BiocGenerics,
        methods, Matrix, Rcpp
Suggests: testthat, knitr, rmarkdown, BiocStyle
LinkingTo: Rcpp
biocViews: Infrastructure, DataRepresentation, Software, HiC
Description: Provides the GInteractions, InteractionSet and ContactMatrix
        objects and associated methods for storing and manipulating genomic
        interaction data from Hi-C and ChIA-PET experiments.
License: GPL-3
NeedsCompilation: yes
SystemRequirements: C++11
VignetteBuilder: knitr
Collate: AllGenerics.R AllClasses.R ContactMatrix-methods.R
        GInteractions-methods.R InteractionSet-methods.R
        GRanges-methods.R getset.R swapAnchors.R pairs.R conversion.R
        linearize.R boundingBox.R distances.R overlaps.R linkOverlaps.R
        matching.R
Packaged: 2018-05-01 00:55:29 UTC; biocbuild
Built: R 3.5.1; x86_64-pc-linux-gnu; 2018-10-19 06:27:14 UTC; unix
