# Independent Hypothesis Weighting

## Documentation for package ‘IHW’ version 1.4.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.

## Help Pages

adj_pvalues | An S4 class to represent the ihw output.
adj_pvalues-method | An S4 class to represent the ihw output.
alpha | An S4 class to represent the ihw output.
alpha-method | An S4 class to represent the ihw output.
as.data.frame-method | An S4 class to represent the ihw output.
as.data.frame_ihwResult | An S4 class to represent the ihw output.
covariates | An S4 class to represent the ihw output.
covariates-method | An S4 class to represent the ihw output.
covariate_type | An S4 class to represent the ihw output.
covariate_type-method | An S4 class to represent the ihw output.
get_bh_threshold | Data-driven threshold of Benjamini Hochberg Procedure
groups_by_filter | Stratify hypotheses based on increasing value of the covariate
groups_factor | An S4 class to represent the ihw output.
groups_factor-method | An S4 class to represent the ihw output.
ihw | ihw: Main function for Independent Hypothesis Weighting
ihw.default | ihw: Main function for Independent Hypothesis Weighting
ihw.DESeqResults | ihw.DESeqResults: IHW method dispatching on DESeqResults objects
ihw.formula | ihw: Main function for Independent Hypothesis Weighting
ihwResult | An S4 class to represent the ihw output.
ihwResult-class | An S4 class to represent the ihw output.
m_groups | An S4 class to represent the ihw output.
m_groups-method | An S4 class to represent the ihw output.
nbins | An S4 class to represent the ihw output.
nbins-method | An S4 class to represent the ihw output.
nfolds | An S4 class to represent the ihw output.
nfolds-method | An S4 class to represent the ihw output.
nrow-method | An S4 class to represent the ihw output.
plot-method | Plot functions for IHW
pvalues | An S4 class to represent the ihw output.
pvalues-method | An S4 class to represent the ihw output.
regularization_term | An S4 class to represent the ihw output.
regularization_term-method | An S4 class to represent the ihw output.
rejected_hypotheses | An S4 class to represent the ihw output.
rejected_hypotheses-method | An S4 class to represent the ihw output.
rejections | An S4 class to represent the ihw output.
rejections-method | An S4 class to represent the ihw output.
show-method | An S4 class to represent the ihw output.
thresholds | An S4 class to represent the ihw output.
thresholds-method | An S4 class to represent the ihw output.
weighted_pvalues | An S4 class to represent the ihw output.
weighted_pvalues-method | An S4 class to represent the ihw output.
weights-method | An S4 class to represent the ihw output.