{% set version = "1.12.0" %}
{% set name = "IgGeneUsage" %}
{% set bioc = "3.16" %}

package:
  name: 'bioconductor-{{ name|lower }}'
  version: '{{ version }}'
source:
  url:
    - 'https://bioconductor.org/packages/{{ bioc }}/bioc/src/contrib/{{ name }}_{{ version }}.tar.gz'
    - 'https://bioarchive.galaxyproject.org/{{ name }}_{{ version }}.tar.gz'
    - 'https://depot.galaxyproject.org/software/bioconductor-{{ name|lower }}/bioconductor-{{ name|lower }}_{{ version }}_src_all.tar.gz'
  md5: 0c9efbfe192d2309fa0ddad0e9892659
build:
  number: 0
  rpaths:
    - lib/R/lib/
    - lib/
# Suggests: BiocStyle, knitr, rmarkdown, testthat (>= 2.1.0), ggplot2, ggforce, gridExtra, ggrepel
# SystemRequirements: GNU make
requirements:
  host:
    - 'bioconductor-summarizedexperiment >=1.28.0,<1.29.0'
    - r-base
    - 'r-bh >=1.66.0'
    - 'r-rcpp >=0.12.0'
    - 'r-rcppeigen >=0.3.3.3.0'
    - 'r-rcppparallel >=5.0.1'
    - 'r-reshape2 >=1.4.3'
    - 'r-rstan >=2.18.1'
    - 'r-rstantools >=2.2.0'
    - 'r-stanheaders >=2.18.0'
    - libblas
    - liblapack
  run:
    - 'bioconductor-summarizedexperiment >=1.28.0,<1.29.0'
    - r-base
    - 'r-bh >=1.66.0'
    - 'r-rcpp >=0.12.0'
    - 'r-rcppeigen >=0.3.3.3.0'
    - 'r-rcppparallel >=5.0.1'
    - 'r-reshape2 >=1.4.3'
    - 'r-rstan >=2.18.1'
    - 'r-rstantools >=2.2.0'
    - 'r-stanheaders >=2.18.0'
  build:
    - {{ compiler('c') }}
    - {{ compiler('cxx') }}
    - automake
    - make
test:
  commands:
    - '$R -e "library(''{{ name }}'')"'
about:
  home: 'https://bioconductor.org/packages/{{ bioc }}/bioc/html/{{ name }}.html'
  license: 'MIT + file LICENSE'
  summary: 'Differential gene usage in immune repertoires'
  description: 'Detection of biases in the usage of immunoglobulin (Ig) genes is an important task in immune repertoire profiling. IgGeneUsage detects aberrant Ig gene usage between biological conditions using a probabilistic model which is analyzed computationally by Bayes inference. With this IgGeneUsage also avoids some common problems related to the current practice of null-hypothesis significance testing.'
  license_file: LICENSE

