# Integrative clustering of multi-type genomic data

## Documentation for package ‘iClusterPlus’ version 1.20.0

- DESCRIPTION file.
- User guides, package vignettes and other documentation.
- Code demos. Use demo() to run them.
- Package NEWS.

## Help Pages

breast.chr17 | Breast cancer data set DNA copy number and mRNA expression measure on chromosome 17
CNregions | A function to remove redundant copy number regions
compute.pod | A function to compute the proportion of deviation from perfect block diagonal matrix
coord | genomic coordinates
gbm.exp | GBM data
gbm.mut | GBM data
gbm.seg | GBM data
getBIC | Utility functions for iClusterPlus package
getClusters | Utility functions for iClusterPlus package
getDevR | Utility functions for iClusterPlus package
glp | good lattice points using the uniform design
iCluster | Integrative clustering of multiple genomic data types
iCluster2 | Integrative clustering of multiple genomic data types
iClusterBayes | Integrative clustering of multiple genomic data types
iClusterPlus | Integrative clustering of multiple genomic data types
iManual | Utility functions for iClusterPlus package
plotHeatmap | A function to generate heatmap panels sorted by integrated cluster assignment.
plotHMBayes | A function to generate heatmap panels sorted by integrated cluster assignment.
plotiCluster | A function to generate cluster separability matrix plot.
plotRI | A function to generate reproducibility index plot.
simuResult | The results for the analysis of the simulated data.
tune.iCluster2 | Integrative clustering of multiple genomic data types
tune.iClusterBayes | Integrative clustering of multiple genomic data
tune.iClusterPlus | Integrative clustering of multiple genomic data
variation.hg18.v10.nov.2010 | Human genome variants of the NCBI 36 (hg18) assembly