Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.30.0
Date: 2019-06-21
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Daniel Lai <dalai@bccrc.ca>, Sohrab Shah <shahs3@mskcc.org>
Import: data.table
Depends: R (>= 2.10.0), data.table (>= 1.11.8)
Description: Corrects GC and mappability biases for readcounts (i.e.
        coverage) in non-overlapping windows of fixed length for single
        whole genome samples, yielding a rough estimate of copy number
        for furthur analysis.  Designed for rapid correction of high
        coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariation, Microarray
git_url: https://git.bioconductor.org/packages/HMMcopy
git_branch: RELEASE_3_11
git_last_commit: 03842bb
git_last_commit_date: 2020-04-27
Date/Publication: 2020-04-27
NeedsCompilation: yes
Packaged: 2020-04-28 00:45:24 UTC; biocbuild
Built: R 4.0.0; x86_64-conda_cos6-linux-gnu; 2020-05-09 19:54:32 UTC; unix
