Package: HMMcopy
Type: Package
Title: Copy number prediction with correction for GC and mappability
        bias for HTS data
Version: 1.20.0
Date: 2016-08-08
Author: Daniel Lai, Gavin Ha, Sohrab Shah
Maintainer: Daniel Lai <dalai@bccrc.ca>, Sohrab Shah <sshah@bccrc.ca>
Import: IRanges
Depends: R (>= 2.10.0), IRanges (>= 1.4.16), geneplotter (>= 1.24.0)
Description: Corrects GC and mappability biases for readcounts (i.e.
        coverage) in non-overlapping windows of fixed length for single
        whole genome samples, yielding a rough estimate of copy number
        for furthur analysis.  Designed for rapid correction of high
        coverage whole genome tumour and normal samples.
License: GPL-3
biocViews: Sequencing, Preprocessing, Visualization,
        CopyNumberVariation, Microarray
NeedsCompilation: yes
Packaged: 2017-10-30 23:34:41 UTC; biocbuild
Built: R 3.4.1; x86_64-pc-linux-gnu; 2017-11-08 19:17:18 UTC; unix
