addScheme	settings
AlignedReadTrack	AlignedReadTrack-class
AlignedReadTrack-class	AlignedReadTrack-class
AlignmentsTrack	AlignmentsTrack-class
AlignmentsTrack-class	AlignmentsTrack-class
AnnotationTrack	AnnotationTrack-class
AnnotationTrack-class	AnnotationTrack-class
as.list,DisplayPars-method	DisplayPars-class
as.list,InferredDisplayPars-method	DisplayPars-class
availableDefaultMapping	ReferenceTrack-class
availableDisplayPars	DisplayPars-class
axTrack	datasets
BiomartGeneRegionTrack	BiomartGeneRegionTrack-class
BiomartGeneRegionTrack-class	BiomartGeneRegionTrack-class
biomTrack	datasets
bmt	datasets
bmTrack	datasets
chromosome	RangeTrack-class
chromosome,GdObject-method	GdObject-class
chromosome,RangeTrack-method	RangeTrack-class
chromosome,SequenceTrack-method	SequenceTrack-class
chromosome<-	RangeTrack-class
chromosome<-,AlignmentsTrack-method	AlignmentsTrack-class
chromosome<-,GdObject-method	GdObject-class
chromosome<-,HighlightTrack-method	HighlightTrack-class
chromosome<-,IdeogramTrack-method	IdeogramTrack-class
chromosome<-,OverlayTrack-method	OverlayTrack-class
chromosome<-,RangeTrack-method	RangeTrack-class
chromosome<-,SequenceTrack-method	SequenceTrack-class
clearSessionCache	UcscTrack
coerce,AnnotationTrack,UCSCData-method	AnnotationTrack-class
coerce,DataTrack,data.frame-method	DataTrack-class
coerce,DisplayPars,list-method	DisplayPars-class
coerce,DNAString,Rle-method	SequenceTrack-class
coerce,GeneRegionTrack,UCSCData-method	GeneRegionTrack-class
coerce,GRanges,AnnotationTrack-method	AnnotationTrack-class
coerce,GRanges,DataTrack-method	DataTrack-class
coerce,GRanges,GeneRegionTrack-method	GeneRegionTrack-class
coerce,GRangesList,AnnotationTrack-method	AnnotationTrack-class
coerce,GRangesList,GeneRegionTrack-method	GeneRegionTrack-class
coerce,InferredDisplayPars,list-method	DisplayPars-class
coerce,RangeTrack,data.frame-method	RangeTrack-class
coerce,TxDb,GeneRegionTrack-method	GeneRegionTrack-class
collapseTrack,AnnotationTrack-method	AnnotationTrack-class
collapseTrack,DataTrack-method	DataTrack-class
collapseTrack,GeneRegionTrack-method	GeneRegionTrack-class
collapseTrack,GenomeAxisTrack-method	GenomeAxisTrack-class
collapsing	collapsing
conservation	datasets
consolidateTrack	GdObject-class
consolidateTrack,AnnotationTrack-method	AnnotationTrack-class
consolidateTrack,GdObject-method	GdObject-class
consolidateTrack,HighlightTrack-method	HighlightTrack-class
consolidateTrack,OverlayTrack-method	OverlayTrack-class
consolidateTrack,RangeTrack-method	RangeTrack-class
consolidateTrack,SequenceTrack-method	SequenceTrack-class
consolidateTrack,StackedTrack-method	StackedTrack-class
coords	GdObject-class
coords,GdObject-method	GdObject-class
coords,ImageMap-method	ImageMap-class
coords,NULL-method	GdObject-class
coverage,AlignedReadTrack-method	AlignedReadTrack-class
coverage,AlignmentsTrack-method	AlignmentsTrack-class
cpgIslands	datasets
ctrack	datasets
CustomTrack	CustomTrack-class
CustomTrack-class	CustomTrack-class
cyp2b10	datasets
DataTrack	DataTrack-class
DataTrack-class	DataTrack-class
denseAnnTrack	datasets
DetailsAnnotationTrack	AnnotationTrack-class
DetailsAnnotationTrack-class	AnnotationTrack-class
DisplayPars	DisplayPars-class
displayPars	DisplayPars-class
displayPars,DisplayPars,character-method	DisplayPars-class
displayPars,DisplayPars,missing-method	DisplayPars-class
displayPars,GdObject,character-method	GdObject-class
displayPars,GdObject,missing-method	GdObject-class
DisplayPars-class	DisplayPars-class
displayPars<-	DisplayPars-class
displayPars<-,DisplayPars,list-method	DisplayPars-class
displayPars<-,GdObject,list-method	GdObject-class
displayPars<-,HighlightTrack,list-method	HighlightTrack-class
displayPars<-,OverlayTrack,list-method	OverlayTrack-class
drawAxis,AlignedReadTrack-method	AlignedReadTrack-class
drawAxis,AlignmentsTrack-method	AlignmentsTrack-class
drawAxis,DataTrack-method	DataTrack-class
drawAxis,GdObject-method	GdObject-class
drawAxis,NumericTrack-method	NumericTrack-class
drawGD	GdObject-class
drawGD,AlignedReadTrack-method	AlignedReadTrack-class
drawGD,AlignmentsTrack-method	AlignmentsTrack-class
drawGD,AnnotationTrack-method	AnnotationTrack-class
drawGD,CustomTrack-method	CustomTrack-class
drawGD,DataTrack-method	DataTrack-class
drawGD,DetailsAnnotationTrack-method	GdObject-class
drawGD,GeneRegionTrack-method	GdObject-class
drawGD,GenomeAxisTrack-method	GenomeAxisTrack-class
drawGD,IdeogramTrack-method	IdeogramTrack-class
drawGD,OverlayTrack-method	OverlayTrack-class
drawGD,SequenceTrack-method	GdObject-class
drawGD,StackedTrack-method	StackedTrack-class
drawGrid,AlignedReadTrack-method	AlignedReadTrack-class
drawGrid,AnnotationTrack-method	AnnotationTrack-class
drawGrid,GdObject-method	GdObject-class
drawGrid,NumericTrack-method	NumericTrack-class
dtHoriz	datasets
end,GenomeAxisTrack-method	GenomeAxisTrack-class
end,IdeogramTrack-method	IdeogramTrack-class
end,RangeTrack-method	RangeTrack-class
end,SequenceTrack-method	SequenceTrack-class
end<-,GenomeAxisTrack-method	GenomeAxisTrack-class
end<-,IdeogramTrack-method	IdeogramTrack-class
end<-,RangeTrack-method	RangeTrack-class
ensGenes	datasets
exon	GeneRegionTrack-class
exon,GeneRegionTrack-method	GeneRegionTrack-class
exon<-	GeneRegionTrack-class
exon<-,GeneRegionTrack,character-method	GeneRegionTrack-class
exportTracks	exportTracks
feature	RangeTrack-class
feature,DataTrack-method	DataTrack-class
feature,RangeTrack-method	RangeTrack-class
feature<-	RangeTrack-class
feature<-,DataTrack,character-method	DataTrack-class
feature<-,RangeTrack,character-method	RangeTrack-class
from	datasets
gcContent	datasets
GdObject	GdObject-class
GdObject-class	GdObject-class
gene	GeneRegionTrack-class
gene,GeneRegionTrack-method	GeneRegionTrack-class
gene<-	GeneRegionTrack-class
gene<-,GeneRegionTrack,character-method	GeneRegionTrack-class
geneDetails	datasets
geneModels	datasets
GeneRegionTrack	GeneRegionTrack-class
GeneRegionTrack-class	GeneRegionTrack-class
genome,RangeTrack-method	RangeTrack-class
genome,SequenceTrack-method	SequenceTrack-class
genome<-,GdObject-method	GdObject-class
genome<-,IdeogramTrack-method	IdeogramTrack-class
genome<-,RangeTrack-method	RangeTrack-class
GenomeAxisTrack	GenomeAxisTrack-class
GenomeAxisTrack-class	GenomeAxisTrack-class
getPar	DisplayPars-class
getPar,DisplayPars,character-method	DisplayPars-class
getPar,DisplayPars,missing-method	DisplayPars-class
getPar,GdObject,character-method	GdObject-class
getPar,GdObject,missing-method	GdObject-class
getScheme	settings
group	AnnotationTrack-class
group,AnnotationTrack-method	AnnotationTrack-class
group,GdObject-method	GdObject-class
group,GeneRegionTrack-method	GeneRegionTrack-class
group<-	AnnotationTrack-class
group<-,AnnotationTrack,character-method	AnnotationTrack-class
group<-,GeneRegionTrack,character-method	GeneRegionTrack-class
grouping	grouping
head,InferredDisplayPars-method	DisplayPars-class
HighlightTrack	HighlightTrack-class
HighlightTrack-class	HighlightTrack-class
identifier	AnnotationTrack-class
identifier,AnnotationTrack-method	AnnotationTrack-class
identifier,GeneRegionTrack-method	GeneRegionTrack-class
identifier<-	AnnotationTrack-class
identifier<-,AnnotationTrack,character-method	AnnotationTrack-class
identifier<-,GeneRegionTrack,character-method	GeneRegionTrack-class
IdeogramTrack	IdeogramTrack-class
IdeogramTrack-class	IdeogramTrack-class
ideoTrack	datasets
idTrack	datasets
idxTrack	datasets
imageMap	GdObject-class
imageMap,GdObject-method	GdObject-class
ImageMap-class	ImageMap-class
initialize,AlignedReadTrack-method	AlignedReadTrack-class
initialize,AlignmentsTrack-method	AlignmentsTrack-class
initialize,AnnotationTrack-method	AnnotationTrack-class
initialize,BiomartGeneRegionTrack-method	BiomartGeneRegionTrack-class
initialize,CustomTrack-method	CustomTrack-class
initialize,DataTrack-method	DataTrack-class
initialize,DetailsAnnotationTrack-method	AnnotationTrack-class
initialize,DisplayPars-method	DisplayPars-class
initialize,GdObject-method	GdObject-class
initialize,GeneRegionTrack-method	GeneRegionTrack-class
initialize,GenomeAxisTrack-method	GenomeAxisTrack-class
initialize,HighlightTrack-method	HighlightTrack-class
initialize,IdeogramTrack-method	IdeogramTrack-class
initialize,OverlayTrack-method	OverlayTrack-class
initialize,RangeTrack-method	RangeTrack-class
initialize,ReferenceAlignmentsTrack-method	AlignmentsTrack-class
initialize,ReferenceAnnotationTrack-method	AnnotationTrack-class
initialize,ReferenceDataTrack-method	DataTrack-class
initialize,ReferenceGeneRegionTrack-method	GeneRegionTrack-class
initialize,ReferenceSequenceTrack-method	SequenceTrack-class
initialize,ReferenceTrack-method	ReferenceTrack-class
initialize,SequenceBSgenomeTrack-method	SequenceTrack-class
initialize,SequenceDNAStringSetTrack-method	SequenceTrack-class
initialize,SequenceTrack-method	SequenceTrack-class
initialize,StackedTrack-method	StackedTrack-class
isActiveSeq,RangeTrack-method	RangeTrack-class
isActiveSeq<-,GdObject-method	GdObject-class
itrack	datasets
knownGenes	datasets
length,GenomeAxisTrack-method	GenomeAxisTrack-class
length,HighlightTrack-method	HighlightTrack-class
length,IdeogramTrack-method	IdeogramTrack-class
length,OverlayTrack-method	OverlayTrack-class
length,RangeTrack-method	RangeTrack-class
length,SequenceTrack-method	SequenceTrack-class
max,RangeTrack-method	RangeTrack-class
min,RangeTrack-method	RangeTrack-class
names,GdObject-method	GdObject-class
names<-,GdObject,character-method	GdObject-class
NumericTrack	NumericTrack-class
NumericTrack-class	NumericTrack-class
OverlayTrack	OverlayTrack-class
OverlayTrack-class	OverlayTrack-class
plotTracks	plotTracks
position	RangeTrack-class
position,IdeogramTrack-method	IdeogramTrack-class
position,RangeTrack-method	RangeTrack-class
range	RangeTrack-class
range,DataTrack-method	DataTrack-class
range,GenomeAxisTrack-method	GenomeAxisTrack-class
range,RangeTrack-method	RangeTrack-class
ranges,GenomeAxisTrack-method	GenomeAxisTrack-class
ranges,RangeTrack-method	RangeTrack-class
ranges<-,GenomeAxisTrack-method	GenomeAxisTrack-class
ranges<-,RangeTrack-method	RangeTrack-class
RangeTrack	RangeTrack-class
RangeTrack-class	RangeTrack-class
ReferenceTrack	ReferenceTrack-class
ReferenceTrack-class	ReferenceTrack-class
refGenes	datasets
score,DataTrack-method	DataTrack-class
seqinfo,RangeTrack-method	RangeTrack-class
seqlevels,RangeTrack-method	RangeTrack-class
seqlevels,SequenceBSgenomeTrack-method	SequenceTrack-class
seqlevels,SequenceDNAStringSetTrack-method	SequenceTrack-class
seqnames,RangeTrack-method	RangeTrack-class
seqnames,SequenceBSgenomeTrack-method	SequenceTrack-class
seqnames,SequenceDNAStringSetTrack-method	SequenceTrack-class
SequenceTrack	SequenceTrack-class
SequenceTrack-class	SequenceTrack-class
setCoverage,AlignedReadTrack-method	AlignedReadTrack-class
setPar	DisplayPars-class
setPar,DisplayPars,character-method	DisplayPars-class
setPar,DisplayPars,list-method	DisplayPars-class
setPar,GdObject,character-method	GdObject-class
setPar,GdObject,list-method	GdObject-class
setStacks,AnnotationTrack-method	AnnotationTrack-class
setStacks,HighlightTrack-method	HighlightTrack-class
setStacks,OverlayTrack-method	OverlayTrack-class
setStacks,StackedTrack-method	StackedTrack-class
settings	settings
show,AlignedReadTrack-method	AlignedReadTrack-class
show,AlignmentsTrack-method	AlignmentsTrack-class
show,AnnotationTrack-method	AnnotationTrack-class
show,CustomTrack-method	CustomTrack-class
show,DataTrack-method	DataTrack-class
show,DisplayPars-method	DisplayPars-class
show,GeneRegionTrack-method	GeneRegionTrack-class
show,GenomeAxisTrack-method	GenomeAxisTrack-class
show,HighlightTrack-method	HighlightTrack-class
show,IdeogramTrack-method	IdeogramTrack-class
show,OverlayTrack-method	OverlayTrack-class
show,ReferenceAnnotationTrack-method	AnnotationTrack-class
show,ReferenceDataTrack-method	DataTrack-class
show,ReferenceGeneRegionTrack-method	GeneRegionTrack-class
snpLocations	datasets
split,AlignedReadTrack,ANY-method	AlignedReadTrack-class
split,AlignedReadTrack-method	AlignedReadTrack-class
split,DataTrack,ANY-method	DataTrack-class
split,DataTrack-method	DataTrack-class
split,RangeTrack,ANY-method	RangeTrack-class
split,RangeTrack-method	RangeTrack-class
StackedTrack	StackedTrack-class
StackedTrack-class	StackedTrack-class
stacking	StackedTrack-class
stacking,StackedTrack-method	StackedTrack-class
stacking<-	StackedTrack-class
stacking<-,StackedTrack,character-method	StackedTrack-class
stacks	StackedTrack-class
stacks,AlignmentsTrack-method	AlignmentsTrack-class
stacks,StackedTrack-method	StackedTrack-class
start,GenomeAxisTrack-method	GenomeAxisTrack-class
start,IdeogramTrack-method	IdeogramTrack-class
start,RangeTrack-method	RangeTrack-class
start,SequenceTrack-method	SequenceTrack-class
start<-,GenomeAxisTrack-method	GenomeAxisTrack-class
start<-,IdeogramTrack-method	IdeogramTrack-class
start<-,RangeTrack-method	RangeTrack-class
strand,DataTrack-method	DataTrack-class
strand,GenomeAxisTrack-method	GenomeAxisTrack-class
strand,RangeTrack-method	RangeTrack-class
strand<-,DataTrack,ANY-method	DataTrack-class
strand<-,DataTrack-method	DataTrack-class
strand<-,RangeTrack,ANY-method	RangeTrack-class
subseq,ReferenceSequenceTrack-method	SequenceTrack-class
subseq,SequenceTrack-method	SequenceTrack-class
subset,AlignedReadTrack-method	AlignedReadTrack-class
subset,AlignmentsTrack-method	AlignmentsTrack-class
subset,AnnotationTrack-method	AnnotationTrack-class
subset,BiomartGeneRegionTrack-method	BiomartGeneRegionTrack-class
subset,DataTrack-method	DataTrack-class
subset,GdObject-method	GdObject-class
subset,GenomeAxisTrack-method	GenomeAxisTrack-class
subset,HighlightTrack-method	HighlightTrack-class
subset,IdeogramTrack-method	IdeogramTrack-class
subset,OverlayTrack-method	OverlayTrack-class
subset,RangeTrack-method	RangeTrack-class
subset,ReferenceAlignmentsTrack-method	AlignmentsTrack-class
subset,ReferenceAnnotationTrack-method	AnnotationTrack-class
subset,ReferenceDataTrack-method	DataTrack-class
subset,ReferenceGeneRegionTrack-method	GeneRegionTrack-class
subset,StackedTrack-method	StackedTrack-class
symbol	GeneRegionTrack-class
symbol,GeneRegionTrack-method	GeneRegionTrack-class
symbol<-	GeneRegionTrack-class
symbol<-,GeneRegionTrack,character-method	GeneRegionTrack-class
tags	GdObject-class
tags,GdObject-method	GdObject-class
tags,ImageMap-method	ImageMap-class
tags,NULL-method	GdObject-class
tail,InferredDisplayPars-method	DisplayPars-class
to	datasets
transcript	GeneRegionTrack-class
transcript,GeneRegionTrack-method	GeneRegionTrack-class
transcript<-	GeneRegionTrack-class
transcript<-,GeneRegionTrack,character-method	GeneRegionTrack-class
twoGroups	datasets
UcscTrack	UcscTrack
values,AlignmentsTrack-method	AlignmentsTrack-class
values,DataTrack-method	DataTrack-class
values,GenomeAxisTrack-method	GenomeAxisTrack-class
values,RangeTrack-method	RangeTrack-class
values<-,DataTrack-method	DataTrack-class
width,GenomeAxisTrack-method	GenomeAxisTrack-class
width,IdeogramTrack-method	IdeogramTrack-class
width,RangeTrack-method	RangeTrack-class
width,SequenceTrack-method	SequenceTrack-class
width<-,IdeogramTrack-method	IdeogramTrack-class
width<-,RangeTrack-method	RangeTrack-class
[	RangeTrack-class
[,AlignedReadTrack,ANY,ANY,ANY-method	AlignedReadTrack-class
[,AlignedReadTrack,ANY,ANY-method	AlignedReadTrack-class
[,AlignedReadTrack-method	AlignedReadTrack-class
[,AlignmentsTrack,ANY,ANY-method	AlignmentsTrack-class
[,DataTrack,ANY,ANY,ANY-method	DataTrack-class
[,DataTrack,ANY,ANY-method	DataTrack-class
[,DataTrack-method	DataTrack-class
[,GenomeAxisTrack,ANY,AN,ANY-method	GenomeAxisTrack-class
[,GenomeAxisTrack,ANY,ANY-method	GenomeAxisTrack-class
[,GenomeAxisTrack-method	GenomeAxisTrack-class
[,IdeogramTrack,ANY,ANY,ANY-method	IdeogramTrack-class
[,IdeogramTrack,ANY,ANY-method	IdeogramTrack-class
[,IdeogramTrack-method	IdeogramTrack-class
[,RangeTrack,ANY,ANY,ANY-method	RangeTrack-class
[,RangeTrack,ANY,ANY-method	RangeTrack-class
[,RangeTrack-method	RangeTrack-class
[,StackedTrack,ANY,ANY,ANY-method	StackedTrack-class
[,StackedTrack,ANY,ANY-method	StackedTrack-class
