anyNA,gsvaParam-method	ssgseaParam-class
anyNA,ssgseaParam-method	ssgseaParam-class
computeGeneSetsOverlap	computeGeneSetsOverlap
computeGeneSetsOverlap,GeneSetCollection,character-method	computeGeneSetsOverlap
computeGeneSetsOverlap,GeneSetCollection,ExpressionSet-method	computeGeneSetsOverlap
computeGeneSetsOverlap,list,character-method	computeGeneSetsOverlap
computeGeneSetsOverlap,list,ExpressionSet-method	computeGeneSetsOverlap
deduplicateGeneSets	deduplicateGeneSets
filterGeneSets	filterGeneSets
filterGeneSets,GeneSetCollection-method	filterGeneSets
filterGeneSets,list-method	filterGeneSets
geneIdsToGeneSetCollection	geneIdsToGeneSetCollection
geneSets	geneSets
geneSets,GsvaExprData-method	geneSets
geneSets,GsvaMethodParam-method	geneSets
geneSets,SingleCellExperiment-method	geneSets
geneSets,SpatialExperiment-method	geneSets
geneSets,SummarizedExperiment-method	geneSets
geneSets<-	gsvaParam-class
geneSets<-,gsvaRanksParam,GsvaGeneSets-method	gsvaParam-class
geneSetSizes	geneSets
geneSetSizes,GsvaExprData-method	geneSets
geneSetSizes,GsvaMethodParam-method	geneSets
gsva	gsva
gsva,dgCMatrix-method	GSVA-pkg-defunct
gsva,ExpressionSet-method	GSVA-pkg-defunct
gsva,gsvaParam-method	gsva
gsva,matrix-method	GSVA-pkg-defunct
gsva,missing-method	GSVA-pkg-defunct
gsva,plageParam-method	gsva
gsva,SingleCellExperiment-method	GSVA-pkg-defunct
gsva,ssgseaParam-method	gsva
gsva,SummarizedExperiment-method	GSVA-pkg-defunct
gsva,zscoreParam-method	gsva
gsva-defunct	gsva-defunct
GSVA-pkg-defunct	GSVA-pkg-defunct
GSVA-pkg-deprecated	GSVA-pkg-deprecated
gsvaAnnotation	gsvaAnnotation
gsvaAnnotation,ExpressionSet-method	gsvaAnnotation
gsvaAnnotation,GeneSetCollection-method	gsvaAnnotation
gsvaAnnotation,GsvaExprData-method	gsvaAnnotation
gsvaAnnotation,list-method	gsvaAnnotation
gsvaAnnotation,SingleCellExperiment-method	gsvaAnnotation
gsvaAnnotation,SpatialExperiment-method	gsvaAnnotation
gsvaAnnotation,SummarizedExperiment-method	gsvaAnnotation
gsvaAnnotation<-	gsvaAnnotation
gsvaAnnotation<-,ExpressionSet,character-method	gsvaAnnotation
gsvaAnnotation<-,ExpressionSet,GeneIdentifierType-method	gsvaAnnotation
gsvaAnnotation<-,GsvaExprData,GeneIdentifierType-method	gsvaAnnotation
gsvaAnnotation<-,list,GeneIdentifierType-method	gsvaAnnotation
gsvaAnnotation<-,SingleCellExperiment,GeneIdentifierType-method	gsvaAnnotation
gsvaAnnotation<-,SpatialExperiment,GeneIdentifierType-method	gsvaAnnotation
gsvaAnnotation<-,SummarizedExperiment,GeneIdentifierType-method	gsvaAnnotation
gsvaEnrichment	gsvaEnrichment
gsvaEnrichment,gsvaRanksParam-method	gsvaEnrichment
GsvaExprData	GsvaExprData-class
GsvaExprData-class	GsvaExprData-class
GsvaGeneSets-class	GsvaGeneSets-class
GsvaMethodParam-class	GsvaMethodParam-class
gsvaParam	gsvaParam-class
gsvaParam-class	gsvaParam-class
gsvaRanks	gsvaRanks
gsvaRanks,gsvaParam-method	gsvaRanks
gsvaRanksParam-class	gsvaParam-class
gsvaScores	gsvaRanks
gsvaScores,gsvaRanksParam-method	gsvaRanks
guessGeneIdType	guessGeneIdType
igsva	igsva
plageParam	plageParam-class
plageParam-class	plageParam-class
readGMT	readGMT
spatCor	spatCor
spatCor,SpatialExperiment-method	spatCor
ssgseaParam	ssgseaParam-class
ssgseaParam-class	ssgseaParam-class
zscoreParam	zscoreParam-class
zscoreParam-class	zscoreParam-class
