# This file created by conda-build 3.24.0
# meta.yaml template originally from:
# /opt/recipe, last modified Wed May 17 04:17:43 2023
# ------------------------------------------------

package:
  name: bioconductor-gsean
  version: 1.18.0
source:
  md5: af8351484ad5740f79512f70044db092
  url:
    - https://bioarchive.galaxyproject.org/gsean_1.18.0.tar.gz
    - https://bioconductor.org/packages/3.16/bioc/src/contrib/gsean_1.18.0.tar.gz
    - https://depot.galaxyproject.org/software/bioconductor-gsean/bioconductor-gsean_1.18.0_src_all.tar.gz
build:
  number: '1'
  rpaths:
    - lib/
    - lib/R/lib/
  string: r42ha9d7317_1
requirements:
  build:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - binutils_impl_linux-64 2.39 he00db2b_1
    - binutils_linux-64 2.39 h5fc0e48_13
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gcc_linux-64 12.2.0 h4798a0e_13
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - ld_impl_linux-64 2.39 hcc3a1bd_1
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgomp 12.2.0 h65d4601_19
    - libsanitizer 12.2.0 h46fd767_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - make 4.3 hd18ef5c_1
    - sysroot_linux-64 2.12 he073ed8_15
  host:
    - _libgcc_mutex 0.1 conda_forge
    - _openmp_mutex 4.5 2_gnu
    - _r-mutex 1.0.1 anacondar_1
    - argcomplete 3.0.8 pyhd8ed1ab_0
    - binutils_impl_linux-64 2.40 hf600244_0
    - bioconductor-annotationdbi 1.60.0 r42hdfd78af_0
    - bioconductor-biobase 2.58.0 r42ha9d7317_1
    - bioconductor-biocfilecache 2.6.0 r42hdfd78af_0
    - bioconductor-biocgenerics 0.44.0 r42hdfd78af_0
    - bioconductor-biocparallel 1.32.5 r42hc247a5b_0
    - bioconductor-biomart 2.54.0 r42hdfd78af_0
    - bioconductor-biostrings 2.66.0 r42hc0cfd56_0
    - bioconductor-data-packages 20230420 hdfd78af_0
    - bioconductor-fgsea 1.24.0 r42hc247a5b_0
    - bioconductor-genomeinfodb 1.34.9 r42hdfd78af_0
    - bioconductor-genomeinfodbdata 1.2.9 r42hdfd78af_0
    - bioconductor-graph 1.76.0 r42ha9d7317_1
    - bioconductor-iranges 2.32.0 r42hc0cfd56_0
    - bioconductor-keggrest 1.38.0 r42hdfd78af_0
    - bioconductor-ppinfer 1.24.0 r42hdfd78af_0
    - bioconductor-s4vectors 0.36.0 r42hc0cfd56_0
    - bioconductor-stringdb 2.10.0 r42hdfd78af_0
    - bioconductor-xvector 0.38.0 r42hc0cfd56_0
    - bioconductor-yeastexpdata 0.44.0 r42hdfd78af_0
    - bioconductor-zlibbioc 1.44.0 r42ha9d7317_2
    - bwidget 1.9.14 ha770c72_1
    - bzip2 1.0.8 h7f98852_4
    - c-ares 1.19.0 hd590300_0
    - ca-certificates 2023.5.7 hbcca054_0
    - cairo 1.16.0 h35add3b_1015
    - curl 8.0.1 h588be90_0
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    - font-ttf-dejavu-sans-mono 2.37 hab24e00_0
    - font-ttf-inconsolata 3.000 h77eed37_0
    - font-ttf-source-code-pro 2.038 h77eed37_0
    - font-ttf-ubuntu 0.83 hab24e00_0
    - fontconfig 2.14.2 h14ed4e7_0
    - fonts-conda-ecosystem 1 0
    - fonts-conda-forge 1 0
    - freetype 2.12.1 hca18f0e_1
    - fribidi 1.0.10 h36c2ea0_0
    - gcc_impl_linux-64 12.2.0 hcc96c02_19
    - gettext 0.21.1 h27087fc_0
    - gfortran_impl_linux-64 12.2.0 h55be85b_19
    - glpk 5.0 h445213a_0
    - gmp 6.2.1 h58526e2_0
    - graphite2 1.3.13 h58526e2_1001
    - gsl 2.7 he838d99_0
    - gxx_impl_linux-64 12.2.0 hcc96c02_19
    - harfbuzz 7.3.0 hdb3a94d_0
    - icu 72.1 hcb278e6_0
    - jq 1.6 h36c2ea0_1000
    - kernel-headers_linux-64 2.6.32 he073ed8_15
    - keyutils 1.6.1 h166bdaf_0
    - krb5 1.20.1 h81ceb04_0
    - ld_impl_linux-64 2.40 h41732ed_0
    - lerc 4.0.0 h27087fc_0
    - libblas 3.9.0 5_h92ddd45_netlib
    - libcblas 3.9.0 5_h92ddd45_netlib
    - libcurl 8.0.1 h588be90_0
    - libdeflate 1.18 h0b41bf4_0
    - libedit 3.1.20191231 he28a2e2_2
    - libev 4.33 h516909a_1
    - libexpat 2.5.0 hcb278e6_1
    - libffi 3.4.2 h7f98852_5
    - libgcc-devel_linux-64 12.2.0 h3b97bd3_19
    - libgcc-ng 12.2.0 h65d4601_19
    - libgfortran-ng 12.2.0 h69a702a_19
    - libgfortran5 12.2.0 h337968e_19
    - libglib 2.76.2 hebfc3b9_0
    - libgomp 12.2.0 h65d4601_19
    - libiconv 1.17 h166bdaf_0
    - libjpeg-turbo 2.1.5.1 h0b41bf4_0
    - liblapack 3.9.0 5_h92ddd45_netlib
    - libnghttp2 1.52.0 h61bc06f_0
    - libnsl 2.0.0 h7f98852_0
    - libpng 1.6.39 h753d276_0
    - libsanitizer 12.2.0 h46fd767_19
    - libsqlite 3.42.0 h2797004_0
    - libssh2 1.10.0 hf14f497_3
    - libstdcxx-devel_linux-64 12.2.0 h3b97bd3_19
    - libstdcxx-ng 12.2.0 h46fd767_19
    - libtiff 4.5.0 ha587672_6
    - libuuid 2.38.1 h0b41bf4_0
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    - libxcb 1.13 h7f98852_1004
    - libxml2 2.10.4 hfdac1af_0
    - libzlib 1.2.13 h166bdaf_4
    - make 4.3 hd18ef5c_1
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    - openssl 3.1.0 hd590300_3
    - pango 1.50.14 heaa33ce_1
    - pcre2 10.40 hc3806b6_0
    - pip 23.1.2 pyhd8ed1ab_0
    - pixman 0.40.0 h36c2ea0_0
    - pthread-stubs 0.4 h36c2ea0_1001
    - python 3.11.3 h2755cc3_0_cpython
    - python_abi 3.11 3_cp311
    - pyyaml 6.0 py311hd4cff14_5
    - r-askpass 1.1 r42h06615bd_3
    - r-assertthat 0.2.1 r42hc72bb7e_3
    - r-base 4.2.3 h4a03800_2
    - r-bh 1.81.0_1 r42hc72bb7e_0
    - r-bit 4.0.5 r42h06615bd_0
    - r-bit64 4.0.5 r42h06615bd_1
    - r-bitops 1.0_7 r42h06615bd_1
    - r-blob 1.2.4 r42hc72bb7e_0
    - r-cachem 1.0.8 r42h57805ef_0
    - r-catools 1.18.2 r42h7525677_1
    - r-chron 2.3_61 r42h57805ef_0
    - r-cli 3.6.1 r42h38f115c_0
    - r-codetools 0.2_19 r42hc72bb7e_0
    - r-colorspace 2.1_0 r42h133d619_0
    - r-cowplot 1.1.1 r42hc72bb7e_1
    - r-cpp11 0.4.3 r42hc72bb7e_0
    - r-crayon 1.5.2 r42hc72bb7e_1
    - r-curl 4.3.3 r42hf9611b0_2
    - r-data.table 1.14.8 r42h133d619_0
    - r-dbi 1.1.3 r42hc72bb7e_1
    - r-dbplyr 2.3.2 r42hc72bb7e_0
    - r-digest 0.6.31 r42h38f115c_0
    - r-dplyr 1.1.2 r42ha503ecb_0
    - r-ellipsis 0.3.2 r42h06615bd_1
    - r-fansi 1.0.4 r42h133d619_0
    - r-farver 2.1.1 r42h7525677_1
    - r-fastmap 1.1.1 r42h38f115c_0
    - r-fastmatch 1.1_3 r42h06615bd_1
    - r-filelock 1.0.2 r42h133d619_1003
    - r-formatr 1.14 r42hc72bb7e_0
    - r-futile.logger 1.4.3 r42hc72bb7e_1004
    - r-futile.options 1.0.1 r42hc72bb7e_1003
    - r-generics 0.1.3 r42hc72bb7e_1
    - r-ggplot2 3.4.2 r42hc72bb7e_0
    - r-glue 1.6.2 r42h06615bd_1
    - r-gplots 3.1.3 r42hc72bb7e_1
    - r-gsubfn 0.7 r42hc72bb7e_1003
    - r-gtable 0.3.3 r42hc72bb7e_0
    - r-gtools 3.9.4 r42h06615bd_0
    - r-hash 3.0.1 r42hc72bb7e_3
    - r-hms 1.1.3 r42hc72bb7e_0
    - r-httr 1.4.6 r42hc72bb7e_0
    - r-igraph 1.4.2 r42h65ed38e_0
    - r-isoband 0.2.7 r42h38f115c_1
    - r-jsonlite 1.8.4 r42h133d619_0
    - r-kernlab 0.9_32 r42h358215d_0
    - r-kernsmooth 2.23_21 r42h13b3f57_0
    - r-labeling 0.4.2 r42hc72bb7e_2
    - r-lambda.r 1.2.4 r42hc72bb7e_2
    - r-lattice 0.21_8 r42h133d619_0
    - r-lifecycle 1.0.3 r42hc72bb7e_1
    - r-magrittr 2.0.3 r42h06615bd_1
    - r-mass 7.3_60 r42h57805ef_0
    - r-matrix 1.5_4 r42he1ae0d6_0
    - r-memoise 2.0.1 r42hc72bb7e_1
    - r-mgcv 1.8_42 r42he1ae0d6_0
    - r-mime 0.12 r42h06615bd_1
    - r-munsell 0.5.0 r42hc72bb7e_1005
    - r-nlme 3.1_162 r42hac0b197_0
    - r-openssl 2.0.6 r42habfbb5e_0
    - r-pillar 1.9.0 r42hc72bb7e_0
    - r-pkgconfig 2.0.3 r42hc72bb7e_2
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    - r-plotrix 3.8_2 r42hc72bb7e_1
    - r-plyr 1.8.8 r42h7525677_0
    - r-png 0.1_8 r42h10cf519_0
    - r-prettyunits 1.1.1 r42hc72bb7e_2
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    - r-proto 1.0.0 r42ha770c72_2004
    - r-purrr 1.0.1 r42h133d619_0
    - r-r6 2.5.1 r42hc72bb7e_1
    - r-rappdirs 0.3.3 r42h06615bd_1
    - r-rcolorbrewer 1.1_3 r42h785f33e_1
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    - r-rcurl 1.98_1.12 r42hf9611b0_1
    - r-rlang 1.1.1 r42ha503ecb_0
    - r-rsqlite 2.3.1 r42h38f115c_0
    - r-scales 1.2.1 r42hc72bb7e_1
    - r-snow 0.4_4 r42hc72bb7e_1
    - r-sqldf 0.4_11 r42hc72bb7e_3
    - r-stringi 1.7.12 r42hc0c3e09_1
    - r-stringr 1.5.0 r42h785f33e_0
    - r-sys 3.4.1 r42h06615bd_0
    - r-tibble 3.2.1 r42h133d619_1
    - r-tidyr 1.3.0 r42h38f115c_0
    - r-tidyselect 1.2.0 r42hc72bb7e_0
    - r-utf8 1.2.3 r42h133d619_0
    - r-vctrs 0.6.2 r42ha503ecb_0
    - r-viridislite 0.4.1 r42hc72bb7e_1
    - r-withr 2.5.0 r42hc72bb7e_1
    - r-xml 3.99_0.14 r42hb43fdd4_0
    - r-xml2 1.3.4 r42h096396e_0
    - readline 8.2 h8228510_1
    - sed 4.8 he412f7d_0
    - setuptools 67.7.2 pyhd8ed1ab_0
    - sysroot_linux-64 2.12 he073ed8_15
    - tk 8.6.12 h27826a3_0
    - tktable 2.10 hb7b940f_3
    - toml 0.10.2 pyhd8ed1ab_0
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    - tzdata 2023c h71feb2d_0
    - wheel 0.40.0 pyhd8ed1ab_0
    - xmltodict 0.13.0 pyhd8ed1ab_0
    - xorg-kbproto 1.0.7 h7f98852_1002
    - xorg-libice 1.0.10 h7f98852_0
    - xorg-libsm 1.2.3 hd9c2040_1000
    - xorg-libx11 1.8.4 h0b41bf4_0
    - xorg-libxau 1.0.9 h7f98852_0
    - xorg-libxdmcp 1.1.3 h7f98852_0
    - xorg-libxext 1.3.4 h0b41bf4_2
    - xorg-libxrender 0.9.10 h7f98852_1003
    - xorg-libxt 1.2.1 h7f98852_2
    - xorg-renderproto 0.11.1 h7f98852_1002
    - xorg-xextproto 7.3.0 h0b41bf4_1003
    - xorg-xproto 7.0.31 h7f98852_1007
    - xz 5.2.6 h166bdaf_0
    - yaml 0.2.5 h7f98852_2
    - yq 3.2.2 pyhd8ed1ab_0
    - zlib 1.2.13 h166bdaf_4
    - zstd 1.5.2 h3eb15da_6
  run:
    - bioconductor-fgsea >=1.24.0,<1.25.0
    - bioconductor-ppinfer >=1.24.0,<1.25.0
    - libblas >=3.9.0,<4.0a0
    - libgcc-ng >=12
    - liblapack >=3.9.0,<4.0a0
    - r-base >=4.2,<4.3.0a0
test:
  commands:
    - $R -e "library('gsean')"
about:
  description: Biological molecules in a living organism seldom work individually.
    They usually interact each other in a cooperative way. Biological process is too
    complicated to understand without considering such interactions. Thus, network-based
    procedures can be seen as powerful methods for studying complex process. However,
    many methods are devised for analyzing individual genes. It is said that techniques
    based on biological networks such as gene co-expression are more precise ways
    to represent information than those using lists of genes only. This package is
    aimed to integrate the gene expression and biological network. A biological network
    is constructed from gene expression data and it is used for Gene Set Enrichment
    Analysis.
  home: https://bioconductor.org/packages/3.16/bioc/html/gsean.html
  license: Artistic-2.0
  summary: Gene Set Enrichment Analysis with Networks
extra:
  copy_test_source_files: true
  final: true
